Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   P5649_RS16465 Genome accession   NZ_CP120613
Coordinates   3060513..3062288 (+) Length   591 a.a.
NCBI ID   WP_004399229.1    Uniprot ID   O34748
Organism   Bacillus subtilis strain DSM 23521     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3055513..3067288
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5649_RS16415 (P5649_16415) yozC 3055949..3056152 (+) 204 WP_003231245.1 DUF6501 family protein -
  P5649_RS16420 (P5649_16420) yozO 3056509..3056853 (+) 345 WP_003220141.1 PH domain-containing protein -
  P5649_RS16425 (P5649_16425) - 3056939..3057172 (-) 234 WP_003231251.1 hypothetical protein -
  P5649_RS16430 (P5649_16430) - 3057177..3057440 (-) 264 WP_004399338.1 hypothetical protein -
  P5649_RS16435 (P5649_16435) yocM 3057507..3057983 (+) 477 WP_003231255.1 salt stress-responsive protein YocM -
  P5649_RS16440 (P5649_16440) - 3057970..3058197 (-) 228 WP_004399329.1 hypothetical protein -
  P5649_RS16445 (P5649_16445) - 3058275..3058607 (+) 333 WP_003231257.1 hypothetical protein -
  P5649_RS16450 (P5649_16450) stpP 3058682..3059173 (+) 492 WP_003231259.1 TraR/DksA family transcriptional regulator -
  P5649_RS16455 (P5649_16455) azoJ 3059323..3059949 (+) 627 WP_003231260.1 FMN-dependent NADH-azoreductase AzoJ -
  P5649_RS16465 (P5649_16465) recQ 3060513..3062288 (+) 1776 WP_004399229.1 DNA helicase RecQ Machinery gene
  P5649_RS16470 (P5649_16470) walN 3062536..3063399 (+) 864 WP_003231267.1 3D domain-containing protein -
  P5649_RS16475 (P5649_16475) desR 3063994..3064593 (-) 600 WP_004399356.1 two-component system response regulator DesR -
  P5649_RS16480 (P5649_16480) desK 3064612..3065724 (-) 1113 WP_277686744.1 two-component sensor histidine kinase DesK -
  P5649_RS16485 (P5649_16485) desE 3065844..3066902 (-) 1059 WP_277686745.1 fatty acid desaturase DesE -

Sequence

Protein


Download         Length: 591 a.a.        Molecular weight: 67352.87 Da        Isoelectric Point: 6.2902

>NTDB_id=733162 P5649_RS16465 WP_004399229.1 3060513..3062288(+) (recQ) [Bacillus subtilis strain DSM 23521]
MLHRAQSLLAHYFGYEKFRSGQDEAIRLVTEARQNTACIMPTGGGKSICYQIPALMFEGTTIVISPLISLMKDQVDALEE
AGINAAYINSTQSNQEIYERLNGLKEGAYKLFYITPERLTSIEFIRILQGIDVPLVAIDEAHCISQWGHDFRPSYRNIEI
LFRELHDKPVIMALTATATPEVHDDICKQLHIQKENTVYTGFSRENLTFKVVKGENKDRFIDEYVQNNRHEAGIVYTATR
KEADRIYERLKRNQVRAGRYHGGLADDVRKEQQERFLNDELQVMVATSAFGMGIDKSNIRFVLHAQIPKDMESYYQEAGR
AGRDGLASECVLLFSPQDIMVQRFLIEQSEHEEKQKQDLKKLRQMVDYCHTEDCLQRFILMYFGEKEPDACGQCGNCTDT
RAAHDVTREAQMVLSCIIRMKERFGKTMVAQVLAGSKNKKVLENGFSDLSTYGILKHQSVGEISDFIEFLISDDFIRMSD
GTFPTLFVSSKGRNVLKGELSVARKEALKAAAITENDELFERLRMVRKEIAAEQGVPPFVVFSDQTLKEMSGKQPVNDDE
LLSIKGVGEQKRAKYGRLFLQEIQAYARMTD

Nucleotide


Download         Length: 1776 bp        

>NTDB_id=733162 P5649_RS16465 WP_004399229.1 3060513..3062288(+) (recQ) [Bacillus subtilis strain DSM 23521]
ATGTTACATAGAGCCCAATCCCTTCTGGCTCATTATTTTGGTTATGAGAAGTTTCGGAGCGGCCAAGATGAAGCGATCCG
CTTGGTGACGGAAGCGAGGCAAAATACGGCCTGCATTATGCCGACGGGAGGCGGCAAATCGATTTGCTATCAGATTCCGG
CATTAATGTTTGAAGGGACGACGATCGTCATTTCACCGTTGATTTCCTTGATGAAGGATCAAGTTGATGCGTTAGAAGAA
GCGGGGATTAACGCCGCCTACATTAACAGCACACAATCCAATCAGGAAATATATGAGAGGCTGAACGGACTCAAAGAAGG
GGCTTATAAGCTTTTTTACATTACACCAGAGCGACTAACGTCCATAGAGTTTATCCGGATTTTGCAGGGCATAGATGTTC
CTTTGGTCGCAATAGACGAGGCGCATTGTATTTCTCAATGGGGCCATGATTTCAGGCCAAGCTACAGGAATATTGAAATC
TTGTTCCGTGAATTACACGACAAGCCTGTCATCATGGCGTTAACAGCAACAGCCACACCCGAGGTTCATGATGATATTTG
CAAACAGCTGCATATTCAAAAAGAAAACACGGTATATACCGGATTTTCCCGAGAGAATTTAACCTTTAAAGTAGTAAAAG
GAGAAAATAAAGATCGGTTTATAGACGAATATGTGCAAAACAACAGGCATGAAGCAGGAATTGTCTATACAGCGACCAGA
AAAGAAGCTGATCGGATATATGAGAGATTGAAACGAAATCAGGTCAGGGCAGGCCGGTATCATGGAGGTTTGGCTGATGA
TGTGAGAAAAGAGCAGCAGGAAAGATTTCTTAATGATGAGCTTCAAGTGATGGTGGCAACCTCTGCTTTTGGAATGGGTA
TTGATAAATCAAATATCAGATTTGTTCTGCATGCACAAATCCCGAAAGATATGGAAAGCTATTATCAAGAGGCAGGACGA
GCTGGACGGGACGGTCTTGCCAGTGAATGTGTTCTCCTGTTTTCACCGCAGGATATTATGGTGCAGCGCTTCTTAATTGA
GCAATCAGAACATGAAGAGAAACAAAAGCAGGATTTAAAAAAGCTGAGACAAATGGTCGACTACTGTCATACGGAAGATT
GTCTGCAGCGTTTTATCCTTATGTATTTCGGAGAAAAGGAGCCTGATGCGTGCGGACAGTGCGGAAACTGTACCGATACA
AGAGCGGCCCATGACGTGACGCGGGAGGCGCAAATGGTCTTATCTTGTATCATTCGCATGAAAGAACGGTTTGGCAAGAC
GATGGTTGCCCAGGTGCTTGCCGGCTCCAAAAATAAAAAAGTTCTTGAAAACGGCTTTTCCGACCTTTCAACATACGGGA
TATTAAAACACCAATCCGTTGGCGAAATCAGTGATTTTATCGAATTTCTTATTTCTGACGACTTCATCAGGATGTCAGAC
GGAACGTTTCCGACTCTTTTTGTCAGCAGTAAAGGAAGGAATGTGCTGAAAGGAGAATTATCAGTAGCGAGAAAAGAAGC
GTTAAAAGCGGCAGCGATTACTGAAAATGACGAGCTATTTGAACGATTGCGCATGGTTCGGAAAGAAATTGCGGCTGAGC
AGGGTGTTCCGCCATTTGTTGTTTTCTCTGACCAAACGTTAAAAGAAATGTCAGGAAAACAGCCCGTAAATGATGATGAA
CTTTTGTCTATAAAAGGAGTCGGAGAACAAAAAAGAGCAAAATACGGCCGGCTTTTTTTACAAGAAATACAGGCTTATGC
AAGGATGACAGACTAA

Domains

Predicted by InterProScan.

RQC domain (RQC)

(403-507)

RecQ zinc-binding (RecQ_Zn_bind)

(336-398)

DEAD/DEAH box helicase (DEAD)

(21-182)

Helicase conserved C-terminal domain (Helicase_C)

(218-324)

HRDC domain (HRDC)

(518-583)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB O34748

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

100

100

1