Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   N8A75_RS12040 Genome accession   NZ_CP104878
Coordinates   2221548..2222168 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis strain 4ZT     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2216548..2227168
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N8A75_RS12000 (N8A75_12000) ptsA 2217679..2218185 (-) 507 WP_029726788.1 PTS glucose transporter subunit IIA -
  N8A75_RS12005 (N8A75_12005) ypqA 2218323..2218742 (+) 420 WP_042976351.1 Hsp20/alpha crystallin family protein -
  N8A75_RS12010 (N8A75_12010) sppG 2218763..2219140 (-) 378 WP_004398696.1 YppG family protein -
  N8A75_RS12015 (N8A75_12015) yppF 2219328..2219516 (+) 189 WP_003230690.1 YppF family protein -
  N8A75_RS12020 (N8A75_12020) yppE 2219555..2219926 (-) 372 WP_003246080.1 YppE family protein -
  N8A75_RS12025 (N8A75_12025) yppD 2219972..2220217 (-) 246 WP_004398488.1 YppD family protein -
  N8A75_RS12030 (N8A75_12030) sspM 2220416..2220520 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  N8A75_RS12035 (N8A75_12035) yppC 2220545..2221507 (-) 963 WP_004398707.1 DUF2515 domain-containing protein -
  N8A75_RS12040 (N8A75_12040) recU 2221548..2222168 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  N8A75_RS12045 (N8A75_12045) ponA 2222190..2224934 (+) 2745 WP_046160510.1 transglycosylase domain-containing protein -
  N8A75_RS12050 (N8A75_12050) ypoC 2225010..2225504 (-) 495 WP_009967579.1 YpoC family protein -
  N8A75_RS12055 (N8A75_12055) nth 2225501..2226160 (-) 660 WP_009967580.1 endonuclease III -
  N8A75_RS12060 (N8A75_12060) dnaD 2226179..2226877 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=733119 N8A75_RS12040 WP_004399067.1 2221548..2222168(+) (recU) [Bacillus subtilis strain 4ZT]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=733119 N8A75_RS12040 WP_004399067.1 2221548..2222168(+) (recU) [Bacillus subtilis strain 4ZT]
GTGATTCGGTATCCTAATGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1