Detailed information    

insolico Bioinformatically predicted

Overview

Name   subA/fin   Type   Machinery gene
Locus tag   P5649_RS04485 Genome accession   NZ_CP120613
Coordinates   880336..880566 (-) Length   76 a.a.
NCBI ID   WP_003243417.1    Uniprot ID   A0ABU0VCT2
Organism   Bacillus subtilis strain DSM 23521     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 875336..885566
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5649_RS04475 (P5649_04475) spoVT 876061..876597 (-) 537 WP_003218365.1 stage V sporulation protein T -
  P5649_RS04480 (P5649_04480) mfd 876733..880266 (-) 3534 WP_003243453.1 transcription-repair coupling factor -
  P5649_RS04485 (P5649_04485) subA/fin 880336..880566 (-) 231 WP_003243417.1 anti-sigma-F factor Fin Machinery gene
  P5649_RS04490 (P5649_04490) pth 880626..881192 (-) 567 WP_003226727.1 aminoacyl-tRNA hydrolase -
  P5649_RS04495 (P5649_04495) rplYB 881299..881913 (-) 615 WP_003243443.1 50S ribosomal protein L25/general stress protein Ctc -
  P5649_RS04500 (P5649_04500) prsS 881998..882951 (-) 954 WP_003218353.1 ribose-phosphate diphosphokinase -
  P5649_RS04505 (P5649_04505) glmU 882974..884344 (-) 1371 WP_003226732.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  P5649_RS04510 (P5649_04510) spoVG 884537..884830 (-) 294 WP_009966269.1 septation regulator SpoVG -
  P5649_RS04515 (P5649_04515) ridA 885024..885401 (-) 378 WP_003226738.1 2-iminobutanoate/2-iminopropanoate deaminase -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8847.81 Da        Isoelectric Point: 5.3895

>NTDB_id=733086 P5649_RS04485 WP_003243417.1 880336..880566(-) (subA/fin) [Bacillus subtilis strain DSM 23521]
MALHYYCRHCGVKVGSLESSMVSTDSLGFQHLTNEERNDMISYKENGDVHVLTICEDCQEALDRNPHYHEYHTFIQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=733086 P5649_RS04485 WP_003243417.1 880336..880566(-) (subA/fin) [Bacillus subtilis strain DSM 23521]
ATGGCTTTGCATTATTATTGTCGTCATTGCGGAGTGAAAGTAGGCAGTCTCGAATCTTCAATGGTATCGACAGACTCACT
TGGATTTCAGCACTTAACAAATGAGGAAAGAAACGATATGATTTCTTATAAAGAAAATGGAGATGTCCATGTTTTGACGA
TATGTGAAGACTGCCAAGAGGCGCTTGACCGAAATCCGCATTACCACGAATATCACACATTTATTCAATAA

Domains

Predicted by InterProScan.

Anti-sigma-F factor Fin (Fin)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  subA/fin Bacillus subtilis subsp. subtilis str. 168

100

100

1