Detailed information    

insolico Bioinformatically predicted

Overview

Name   eppA   Type   Machinery gene
Locus tag   N6C89_RS07225 Genome accession   NZ_CP104873
Coordinates   1436587..1437624 (+) Length   345 a.a.
NCBI ID   WP_262289742.1    Uniprot ID   -
Organism   Methanococcus aeolicus strain PL15/HP     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1431587..1442624
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N6C89_RS07205 (N6C89_07205) - 1432509..1433483 (-) 975 WP_262289740.1 methionine synthase -
  N6C89_RS07210 (N6C89_07210) ade 1433480..1435270 (-) 1791 WP_262289741.1 adenine deaminase -
  N6C89_RS07215 (N6C89_07215) - 1435364..1436113 (-) 750 WP_011973645.1 HDIG domain-containing metalloprotein -
  N6C89_RS07220 (N6C89_07220) - 1436200..1436574 (+) 375 WP_011973646.1 cysteine-rich small domain-containing protein -
  N6C89_RS07225 (N6C89_07225) eppA 1436587..1437624 (+) 1038 WP_262289742.1 A24 family peptidase C-terminal domain-containing protein Machinery gene
  N6C89_RS07230 (N6C89_07230) - 1437654..1438694 (+) 1041 WP_262289743.1 DUF5655 domain-containing protein -
  N6C89_RS07235 (N6C89_07235) nuoB 1438762..1439502 (-) 741 WP_262289744.1 NADH-quinone oxidoreductase subunit NuoB -
  N6C89_RS07240 (N6C89_07240) - 1439515..1441080 (-) 1566 WP_262289745.1 hydrogenase -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 39048.87 Da        Isoelectric Point: 7.2597

>NTDB_id=733056 N6C89_RS07225 WP_262289742.1 1436587..1437624(+) (eppA) [Methanococcus aeolicus strain PL15/HP]
MISFDYLTIAYIINFILLSIATYTDIKTREIPHIITIIMLIINLPLGFYLFGFEAIWAFLSTLILCLILGIGMGGGDIKL
FTVLAPIFLFAGTILYIPKAILILIGISAGISAFYPMLNILKKYWKEIIPSSAYLAMVLGIIIYIISFYNVPYAILFVWG
YIILSVFISRKVSGYKEFTKKAGFFAPLYLIGLYLLDYNYFVNNQMLLQFLVYVGELSLISIVIYALTGAEISSKKLVKD
LKEGDILRDIITIEGNSVTVEGANILKRFKLMVDAEIGKNETENKKILMTDGEGLYKEDLELLQKLHKEGKIPNELNLIT
TYPFVPFVLAGYIAVLVLHYYFNLF

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=733056 N6C89_RS07225 WP_262289742.1 1436587..1437624(+) (eppA) [Methanococcus aeolicus strain PL15/HP]
ATGATTAGTTTTGATTATTTAACCATTGCATATATTATTAATTTTATTTTATTGTCCATAGCCACCTACACAGACATAAA
AACAAGGGAAATTCCCCATATAATTACCATCATAATGTTAATTATTAATTTACCTTTGGGATTTTATTTATTTGGATTTG
AGGCAATTTGGGCATTTTTATCAACTTTAATATTATGTTTAATATTGGGTATCGGAATGGGAGGGGGAGATATAAAATTA
TTTACAGTTTTAGCTCCGATTTTCCTATTTGCTGGAACAATATTGTATATTCCAAAGGCAATATTAATATTAATAGGAAT
TAGTGCGGGAATATCTGCATTTTATCCTATGCTAAATATATTGAAAAAATATTGGAAAGAAATAATTCCTTCTTCGGCAT
ATTTGGCAATGGTGTTGGGCATTATTATCTATATAATTAGTTTTTACAATGTTCCATATGCAATATTGTTTGTTTGGGGA
TATATTATATTATCTGTATTCATATCTAGAAAAGTAAGCGGATATAAAGAATTTACAAAAAAGGCAGGATTTTTTGCGCC
ATTGTATTTGATTGGGCTGTATTTGTTAGATTATAATTATTTTGTGAATAATCAGATGTTGTTGCAATTTTTGGTCTATG
TTGGGGAATTAAGCCTTATATCAATAGTGATTTATGCCTTAACTGGTGCAGAAATATCCAGTAAAAAATTGGTAAAAGAC
TTAAAAGAGGGAGACATATTACGGGACATTATCACAATTGAAGGAAATTCTGTAACCGTAGAGGGGGCAAATATCTTAAA
AAGATTTAAATTAATGGTAGATGCTGAAATTGGCAAAAATGAAACAGAAAATAAAAAAATATTGATGACAGATGGGGAAG
GACTATATAAGGAGGACTTGGAGCTCCTCCAAAAATTACATAAAGAAGGAAAAATACCAAACGAATTAAATTTAATTACA
ACCTATCCATTTGTTCCATTTGTATTGGCTGGTTATATTGCTGTGTTGGTACTCCATTATTATTTTAATTTATTTTAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(13-104)

Archaeal Peptidase A24 C-terminal Domain (Arc_PepC)

(209-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  eppA Methanococcus maripaludis strain DSM 2067

59.884

99.71

0.597