Detailed information    

insolico Bioinformatically predicted

Overview

Name   recS   Type   Machinery gene
Locus tag   P5661_RS12215 Genome accession   NZ_CP120600
Coordinates   2325344..2326834 (-) Length   496 a.a.
NCBI ID   WP_038828563.1    Uniprot ID   -
Organism   Bacillus subtilis strain PRO112     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2320344..2331834
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5661_RS12185 (P5661_12185) gudB 2320488..2321762 (-) 1275 WP_003230536.1 NAD-specific glutamate dehydrogenase -
  P5661_RS12190 (P5661_12190) mecB 2321918..2322502 (-) 585 WP_003230533.1 genetic competence negative regulator -
  P5661_RS12195 (P5661_12195) ypbG 2322661..2323440 (-) 780 WP_046381152.1 metallophosphoesterase -
  P5661_RS12200 (P5661_12200) ypbF 2323527..2323970 (-) 444 WP_003230531.1 YpbF family protein -
  P5661_RS12205 (P5661_12205) ypbE 2324033..2324764 (-) 732 WP_212060727.1 LysM peptidoglycan-binding domain-containing protein -
  P5661_RS12210 (P5661_12210) ypbD 2324715..2325317 (-) 603 WP_038828565.1 CPBP family intramembrane glutamic endopeptidase -
  P5661_RS12215 (P5661_12215) recS 2325344..2326834 (-) 1491 WP_038828563.1 ATP-dependent DNA helicase RecQ Machinery gene
  P5661_RS12220 (P5661_12220) gmmB 2326827..2327885 (-) 1059 WP_070547496.1 helix-turn-helix domain-containing protein -
  P5661_RS12225 (P5661_12225) fer 2328151..2328399 (+) 249 WP_003225461.1 ferredoxin -
  P5661_RS12230 (P5661_12230) fmnP 2328438..2329010 (-) 573 WP_004399159.1 riboflavin transporter FmnP -
  P5661_RS12235 (P5661_12235) serA 2329508..2331085 (+) 1578 WP_004398713.1 phosphoglycerate dehydrogenase -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 56562.11 Da        Isoelectric Point: 6.3928

>NTDB_id=732985 P5661_RS12215 WP_038828563.1 2325344..2326834(-) (recS) [Bacillus subtilis strain PRO112]
MTKLQQTLYQFFGFTSFKKGQQDIIESILSGKDTIAMLPTGGGKSLCYQLPGYMLDGMVLIVSPLLSLMEDQVQQLKARG
EKRAAALNSMLNRQERQFVLEHIHRYKFLYLSPEALQSPYVLEKLKSVPISLFVIDEAHCISEWGHDFRPDYSKLGQLRK
KLGHPPVLALTATATKETLQDVMNLLELQHAVRHLNSVNRPNIALRVENAADTAEKIDRVIQLVENLQGPGIVYCPTRKW
AEELAGEIKSKTSSRADFYHGGLESGDRILIQQQFIHNQLDVICCTNAFGMGVDKPDIRYVIHFHLPQTAEAFMQEIGRA
GRDGKPSVSILLRAPGDFELQEQIIQMESVTAEEIADVIRVLEKTEERDERRLRDVLLQYGVGETQARMMIHLFMQGKTS
VELMKKEISYRMELKLEKMHRVSFLLQRDGCLRQALLTYFDESYEPDDGNLPCCSYCGFDLSLYEQKGERSKMAPLDSWS
SELHRIFNLQTVGELN

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=732985 P5661_RS12215 WP_038828563.1 2325344..2326834(-) (recS) [Bacillus subtilis strain PRO112]
ATGACTAAATTACAGCAAACGTTATATCAGTTTTTTGGTTTTACTTCCTTTAAAAAAGGGCAGCAGGACATTATTGAAAG
CATACTCAGCGGGAAGGATACCATTGCAATGCTCCCGACTGGGGGAGGGAAATCGCTTTGCTACCAGCTGCCTGGTTATA
TGCTTGACGGCATGGTATTAATCGTTTCTCCACTGCTTTCTTTAATGGAGGATCAGGTGCAGCAGTTGAAAGCCCGGGGG
GAAAAGCGTGCTGCAGCTTTGAACAGCATGCTTAACAGGCAGGAAAGACAATTTGTTTTAGAACATATTCATCGATATAA
ATTTTTGTACTTGTCTCCTGAAGCTTTACAGTCTCCATATGTATTGGAAAAATTGAAAAGCGTCCCGATCAGCCTATTTG
TTATTGACGAAGCGCATTGTATTTCTGAATGGGGACACGACTTCAGGCCTGATTATTCAAAGCTCGGACAGCTGAGAAAA
AAACTTGGTCACCCGCCCGTTCTGGCATTGACCGCCACGGCTACAAAGGAAACGCTGCAAGATGTCATGAACCTGCTGGA
GCTGCAGCATGCTGTACGCCATCTCAACTCAGTCAACCGCCCAAACATCGCACTGAGGGTTGAAAATGCGGCGGATACTG
CCGAAAAAATAGATAGGGTCATTCAGCTGGTTGAAAACCTGCAAGGCCCGGGAATTGTTTATTGTCCGACACGGAAATGG
GCTGAGGAATTAGCGGGTGAGATTAAAAGCAAAACGAGCAGCAGAGCCGACTTTTACCATGGCGGTTTGGAGTCAGGGGA
CAGGATTTTAATTCAGCAGCAGTTTATTCATAACCAGCTTGATGTGATATGTTGTACGAATGCGTTTGGAATGGGTGTCG
ATAAACCTGATATCAGATATGTGATTCATTTTCACCTCCCGCAGACGGCAGAAGCTTTTATGCAGGAAATCGGCAGAGCG
GGACGCGACGGAAAGCCGAGTGTCAGCATTTTGCTGCGGGCGCCAGGGGATTTTGAATTGCAGGAACAAATTATCCAGAT
GGAGAGTGTCACAGCTGAAGAAATCGCCGACGTAATCCGTGTGCTAGAGAAGACGGAGGAGCGGGATGAGAGAAGGCTTC
GTGACGTATTACTTCAGTATGGCGTCGGAGAGACACAGGCCCGTATGATGATTCATCTCTTTATGCAGGGAAAAACATCA
GTTGAACTGATGAAGAAAGAAATTTCATATCGCATGGAGCTGAAGCTGGAAAAAATGCACCGTGTATCATTTTTACTTCA
GCGTGACGGCTGTTTAAGGCAGGCACTGTTAACCTACTTTGATGAATCATACGAGCCTGATGACGGAAACCTCCCGTGCT
GTTCATATTGCGGTTTTGATTTATCCTTGTATGAACAAAAAGGGGAACGGAGTAAAATGGCGCCATTAGACAGCTGGAGT
TCGGAATTGCACCGGATATTCAACTTGCAGACTGTAGGTGAGCTGAACTGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(215-323)

DEAD/DEAH box helicase (DEAD)

(20-180)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recS Bacillus subtilis subsp. subtilis str. 168

99.395

100

0.994