Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   P5661_RS11170 Genome accession   NZ_CP120600
Coordinates   2147536..2149311 (-) Length   591 a.a.
NCBI ID   WP_212082206.1    Uniprot ID   -
Organism   Bacillus subtilis strain PRO112     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2142536..2154311
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5661_RS11150 (P5661_11150) desE 2142915..2143973 (+) 1059 WP_004399588.1 fatty acid desaturase DesE -
  P5661_RS11155 (P5661_11155) desK 2144093..2145205 (+) 1113 WP_003231271.1 two-component sensor histidine kinase DesK -
  P5661_RS11160 (P5661_11160) desR 2145224..2145823 (+) 600 WP_004399356.1 two-component system response regulator DesR -
  P5661_RS11165 (P5661_11165) walL 2146425..2147288 (-) 864 WP_003231267.1 3D domain-containing protein -
  P5661_RS11170 (P5661_11170) recQ 2147536..2149311 (-) 1776 WP_212082206.1 DNA helicase RecQ Machinery gene
  P5661_RS11180 (P5661_11180) azoJ 2149876..2150502 (-) 627 WP_003231260.1 FMN-dependent NADH-azoreductase AzoJ -
  P5661_RS11185 (P5661_11185) yocK 2150653..2151144 (-) 492 WP_003231259.1 TraR/DksA family transcriptional regulator -
  P5661_RS11190 (P5661_11190) - 2151219..2151551 (-) 333 WP_014480020.1 hypothetical protein -
  P5661_RS11195 (P5661_11195) - 2151629..2151856 (+) 228 WP_077671345.1 hypothetical protein -
  P5661_RS11200 (P5661_11200) yocM 2151843..2152319 (-) 477 WP_014477071.1 salt stress-responsive protein YocM -
  P5661_RS11205 (P5661_11205) - 2152386..2152649 (+) 264 WP_004399338.1 hypothetical protein -
  P5661_RS11210 (P5661_11210) - 2152654..2152887 (+) 234 WP_003231251.1 hypothetical protein -
  P5661_RS11215 (P5661_11215) yozO 2152981..2153325 (-) 345 WP_003220141.1 PH domain-containing protein -
  P5661_RS11220 (P5661_11220) yozC 2153681..2153884 (-) 204 WP_003231245.1 DUF6501 family protein -

Sequence

Protein


Download         Length: 591 a.a.        Molecular weight: 67333.87 Da        Isoelectric Point: 6.3545

>NTDB_id=732983 P5661_RS11170 WP_212082206.1 2147536..2149311(-) (recQ) [Bacillus subtilis strain PRO112]
MLHRAQSLLAHYFGYEKFRSGQDEAIRLVTEARQNTACIMPTGGGKSICYQIPALMFEGTTIVISPLISLMKDQVDALEE
AGINAAYINSTQSNQEIYERLNGLKEGAYKLFYITPERLTSIEFIRILQGIDVPLVAIDEAHCISQWGHDFRPSYRNIEI
LFRELHDKPVIMALTATATPEVHDDICKQLHIQKENTVYTGFSRENLTFKVVKGENKDRFIDEYVQNNRHEAGIVYTATR
KEADRIYEKLKRNHVRAGRYHGGLADDVRKEQQERFLNDELQVMVATSAFGMGIDKSNIRFVLHAQIPKDMESYYQEAGR
AGRDGLASECVLLFSPQDIMVQRFLIEQSEHEEKQKQDLKKLRQMVDYCHTEDCLQRFILMYFGEKEPDACGQCGNCTDT
RAAHDVTREAQMVLSCIIRMKERFGKTMVAQVLAGSKNKKVLENGFSDLSTYGILKHQSVGEISDFIEFLISDDFIRMSD
GTFPTLFVSSKGRNVLKGELSVARKEALKAAAITENDELFERLRMVRKEIAAEQGVPPFVVFSDQTLKEMSGKQPVNDDE
LLSIKGVGEQKRAKYGRLFLQEIQAYARMTD

Nucleotide


Download         Length: 1776 bp        

>NTDB_id=732983 P5661_RS11170 WP_212082206.1 2147536..2149311(-) (recQ) [Bacillus subtilis strain PRO112]
ATGTTACATAGAGCCCAATCCCTTCTGGCTCATTATTTTGGTTATGAGAAGTTTCGGAGCGGCCAAGATGAAGCGATCCG
CTTGGTGACGGAAGCGAGGCAAAATACGGCCTGCATTATGCCGACGGGAGGCGGCAAATCGATTTGCTATCAAATTCCGG
CATTAATGTTTGAAGGGACGACGATCGTCATATCACCGTTGATTTCCTTGATGAAGGATCAAGTTGATGCGTTAGAAGAA
GCGGGGATTAACGCCGCCTACATTAACAGCACACAATCCAATCAGGAAATATATGAGAGGCTGAACGGACTCAAAGAAGG
GGCTTATAAGCTTTTTTACATTACACCAGAGCGACTAACGTCCATAGAGTTTATCCGGATTTTGCAGGGCATAGATGTTC
CTTTGGTCGCAATAGACGAGGCGCATTGTATTTCTCAATGGGGCCATGATTTCAGGCCAAGCTACAGGAATATTGAAATC
TTGTTCCGTGAATTACACGACAAGCCTGTCATCATGGCGTTAACAGCAACAGCCACACCCGAGGTTCATGATGATATTTG
CAAACAGCTGCATATTCAAAAAGAAAACACGGTATATACCGGATTTTCCCGAGAGAATTTAACCTTTAAAGTAGTAAAAG
GAGAAAATAAAGATCGGTTTATAGACGAATATGTGCAAAACAACAGGCATGAAGCAGGAATTGTCTATACAGCGACTAGA
AAAGAAGCTGATCGGATATATGAGAAATTGAAACGAAACCATGTCAGGGCAGGCCGGTATCATGGAGGTTTGGCTGATGA
TGTGAGAAAAGAGCAGCAGGAAAGGTTTCTTAATGATGAGCTTCAAGTGATGGTGGCAACCTCTGCTTTTGGAATGGGTA
TTGATAAATCAAATATCAGATTTGTTCTGCATGCACAAATTCCGAAAGATATGGAAAGCTATTATCAAGAGGCAGGACGA
GCTGGACGGGACGGTCTTGCCAGTGAATGTGTTCTCCTGTTTTCACCGCAGGATATTATGGTGCAGCGCTTCTTAATTGA
GCAATCAGAACATGAAGAGAAACAAAAGCAGGATTTAAAAAAACTGAGACAAATGGTCGACTACTGTCATACGGAAGATT
GTCTGCAGCGTTTTATCCTTATGTATTTCGGAGAAAAGGAGCCTGATGCGTGCGGACAGTGCGGAAACTGTACCGATACA
AGAGCGGCCCATGACGTGACGCGGGAGGCGCAAATGGTCTTATCCTGTATCATTCGCATGAAAGAACGGTTTGGCAAGAC
GATGGTTGCCCAGGTGCTTGCCGGCTCCAAAAATAAAAAAGTTCTTGAAAATGGCTTTTCAGACCTTTCAACATACGGGA
TATTAAAACACCAATCCGTTGGCGAAATCAGTGATTTTATCGAATTTCTTATTTCTGACGACTTCATCAGGATGTCAGAC
GGAACGTTTCCGACTCTTTTTGTCAGCAGTAAAGGAAGAAATGTGCTGAAAGGAGAATTATCAGTAGCGAGAAAAGAAGC
GTTAAAAGCGGCAGCGATTACTGAAAATGACGAGCTATTTGAACGATTGCGCATGGTTCGGAAAGAAATTGCGGCTGAGC
AGGGTGTTCCGCCATTTGTTGTTTTCTCTGACCAAACGTTAAAAGAAATGTCAGGAAAACAGCCCGTAAATGATGATGAA
CTTTTGTCTATAAAAGGAGTCGGAGAACAAAAAAGAGCAAAATACGGCCGGCTTTTTTTACAAGAAATACAAGCTTATGC
AAGGATGACAGACTAA

Domains

Predicted by InterProScan.

RQC domain (RQC)

(403-507)

DEAD/DEAH box helicase (DEAD)

(21-182)

RecQ zinc-binding (RecQ_Zn_bind)

(336-398)

Helicase conserved C-terminal domain (Helicase_C)

(218-324)

HRDC domain (HRDC)

(518-583)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

99.662

100

0.997