Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   FLY99_RS05150 Genome accession   NZ_AP024561
Coordinates   1076318..1076833 (-) Length   171 a.a.
NCBI ID   WP_001130207.1    Uniprot ID   -
Organism   Escherichia coli strain NIPH17_0036     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1071318..1081833
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FLY99_RS05125 ygaZ 1071717..1072454 (+) 738 WP_000445658.1 L-valine exporter subunit YgaZ -
  FLY99_RS05130 ygaH 1072444..1072779 (+) 336 WP_000119750.1 L-valine transporter subunit YgaH -
  FLY99_RS05135 emrR 1072870..1073400 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  FLY99_RS05140 emrA 1073527..1074699 (+) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  FLY99_RS05145 emrB 1074716..1076254 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  FLY99_RS05150 luxS 1076318..1076833 (-) 516 WP_001130207.1 S-ribosylhomocysteine lyase Regulator
  FLY99_RS05155 gshA 1076983..1078539 (-) 1557 WP_000611802.1 glutamate--cysteine ligase -
  FLY99_RS05160 yqaA 1078612..1079040 (-) 429 WP_001287457.1 YqaA family protein -
  FLY99_RS05165 yqaB 1079037..1079603 (-) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  FLY99_RS05195 csrA 1081061..1081246 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19430.26 Da        Isoelectric Point: 5.2597

>NTDB_id=73298 FLY99_RS05150 WP_001130207.1 1076318..1076833(-) (luxS) [Escherichia coli strain NIPH17_0036]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGKGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=73298 FLY99_RS05150 WP_001130207.1 1076318..1076833(-) (luxS) [Escherichia coli strain NIPH17_0036]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAAGGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAATGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment