Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   P5661_RS06120 Genome accession   NZ_CP120600
Coordinates   1185229..1187088 (+) Length   619 a.a.
NCBI ID   WP_252360566.1    Uniprot ID   -
Organism   Bacillus subtilis strain PRO112     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1180229..1192088
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5661_RS06085 (P5661_06085) yjbC 1180927..1181505 (+) 579 WP_003224597.1 GNAT family N-acetyltransferase -
  P5661_RS06090 (P5661_06090) spx 1181686..1182081 (+) 396 WP_014476435.1 transcriptional regulator Spx -
  P5661_RS06095 (P5661_06095) yjbE 1182127..1182783 (-) 657 WP_003232944.1 TerC family protein -
  P5661_RS06100 (P5661_06100) - 1182953..1183093 (+) 141 WP_119122854.1 hypothetical protein -
  P5661_RS06105 (P5661_06105) mecA 1183060..1183716 (+) 657 WP_003239278.1 adaptor protein MecA Regulator
  P5661_RS06110 (P5661_06110) - 1183711..1183833 (-) 123 WP_021479547.1 hypothetical protein -
  P5661_RS06115 (P5661_06115) coiA 1183877..1185028 (+) 1152 WP_043857280.1 competence protein CoiA Machinery gene
  P5661_RS06120 (P5661_06120) pepF 1185229..1187088 (+) 1860 WP_252360566.1 oligoendopeptidase F Regulator
  P5661_RS06125 (P5661_06125) - 1187126..1187293 (-) 168 WP_003244944.1 hypothetical protein -
  P5661_RS06130 (P5661_06130) spxH 1187608..1188507 (-) 900 WP_003245184.1 protease adaptor protein SpxH -
  P5661_RS06135 (P5661_06135) yjbI 1188504..1188902 (-) 399 WP_003232928.1 group 2 truncated hemoglobin YjbI -
  P5661_RS06140 (P5661_06140) cwlQ 1189157..1189891 (-) 735 WP_250621654.1 bifunctional muramidase/murein lytic transglycosylase -
  P5661_RS06145 (P5661_06145) yjbK 1189906..1190478 (-) 573 WP_085186275.1 CYTH domain-containing protein -
  P5661_RS06150 (P5661_06150) - 1190603..1190971 (+) 369 WP_003232922.1 hypothetical protein -
  P5661_RS06155 (P5661_06155) yjbM 1191000..1191635 (+) 636 WP_003245294.1 GTP diphosphokinase -

Sequence

Protein


Download         Length: 619 a.a.        Molecular weight: 71349.47 Da        Isoelectric Point: 5.7705

>NTDB_id=732957 P5661_RS06120 WP_252360566.1 1185229..1187088(+) (pepF) [Bacillus subtilis strain PRO112]
MNQRRRGGSPWLRKKKANQLPDRSEVKAEDTWRLEDIFPSDEAWNKEFQAVKELIPNLSKYKGKLADSADHLYEALTYQD
KVMERLGRLYTYAHMRSDQDTGNSFYQGLNDKAGNLYTQAASATAYLVPEILSIEEDKLQQFILEKEELKLYSHAIEEIT
KERPHVLSEKEEALLAEASEVLGSSSNTFSVLNNADITFPSIKDEDGNEKQITHGNFINFLESENREVRKNAFDAVYKTY
GQYKNTMATTLSGTVKKDNFYARVKKYKSAREAALSNNSIPEEVYDNLVKTINKHLPLLHRYIALRKKVLELDEVHIYDL
YTPLVKDAGMKVTYEEAKDYMLKGLAPLGEEYASILKEGLENRWVDVYENKGKRNGAYSSGAYGTNPYILMNWHNNVNNL
FTLVHEFGHSVHSYYTRKHQPYPYGNYSIFVAEVASTTNEALLGEYLLNNLEDEKQRLYILNHMLEGFRGTVFRQTMFAE
FEHLIHTKAQEGEPLTPELLTNVYYDLNKKYFGDGMVIDKEIGLEWSRIPHFYYNYYVYQYATGYSAAQALSSQILKEGK
PAVDRYIDFLKAGSSQYPIDVLKKAGVDMTSPEPIEAACKMFEEKLDEMEELLMKVKQS

Nucleotide


Download         Length: 1860 bp        

>NTDB_id=732957 P5661_RS06120 WP_252360566.1 1185229..1187088(+) (pepF) [Bacillus subtilis strain PRO112]
TTGAATCAAAGAAGACGAGGGGGATCACCATGGCTGAGGAAAAAAAAAGCAAACCAACTGCCTGACAGAAGTGAGGTAAA
GGCAGAAGACACATGGAGACTTGAGGATATTTTTCCTAGTGATGAGGCCTGGAATAAAGAATTTCAAGCTGTAAAAGAAT
TAATTCCGAATTTATCTAAGTATAAAGGAAAGCTGGCAGATTCAGCTGATCATTTATACGAGGCTCTTACGTATCAAGAT
AAAGTGATGGAGCGGCTGGGTAGGCTGTACACATATGCGCATATGCGCTCAGACCAGGATACTGGGAACTCCTTTTACCA
GGGGCTGAATGACAAGGCGGGAAACCTGTATACACAGGCCGCAAGCGCGACAGCTTATTTGGTTCCGGAGATTTTATCCA
TAGAAGAAGACAAACTGCAGCAGTTCATTCTTGAAAAAGAAGAATTAAAGCTGTACTCTCATGCGATTGAGGAGATTACA
AAGGAACGTCCGCATGTGCTGAGCGAGAAGGAAGAGGCGCTGCTTGCTGAAGCTTCCGAGGTACTGGGGTCATCTTCAAA
TACATTCAGCGTGTTAAATAACGCAGATATCACGTTCCCGTCCATTAAAGACGAAGATGGGAATGAAAAACAGATCACTC
ACGGCAATTTTATTAATTTCTTGGAAAGTGAAAACCGTGAAGTCCGCAAAAATGCGTTTGACGCAGTGTATAAAACGTAC
GGACAATATAAAAACACAATGGCCACGACGCTAAGCGGCACTGTGAAAAAGGACAACTTCTACGCGAGAGTGAAAAAGTA
CAAGTCCGCGCGTGAGGCTGCGCTTTCTAACAACAGTATTCCTGAGGAAGTATACGATAACCTTGTTAAGACGATTAATA
AGCATTTGCCGCTCCTGCACCGCTATATTGCGCTCAGAAAGAAAGTGCTTGAGCTTGATGAAGTGCATATCTATGACCTG
TATACACCGCTTGTGAAAGATGCTGGGATGAAGGTGACATACGAGGAAGCCAAAGATTACATGCTGAAAGGCCTCGCACC
TTTAGGGGAAGAATATGCCTCTATCCTAAAAGAAGGACTGGAAAACCGCTGGGTGGACGTTTACGAAAATAAAGGCAAAC
GCAATGGGGCTTATTCATCAGGAGCTTACGGCACGAATCCGTATATTTTGATGAACTGGCATAATAACGTCAATAATCTC
TTTACGCTTGTGCACGAGTTTGGACATTCCGTACACAGCTACTATACGAGAAAGCACCAGCCTTATCCATACGGCAATTA
CAGCATCTTTGTCGCGGAAGTTGCCTCTACGACAAATGAAGCGCTCCTTGGCGAATATTTGCTGAACAATTTAGAGGATG
AAAAACAGCGCTTATATATTCTCAACCATATGCTTGAGGGCTTCAGGGGAACGGTTTTCAGACAAACGATGTTCGCTGAA
TTTGAACATCTGATCCATACAAAGGCGCAAGAAGGCGAGCCGCTTACACCTGAGCTTCTGACAAATGTCTATTACGACCT
GAATAAAAAGTATTTTGGAGACGGCATGGTGATTGATAAGGAAATCGGCCTTGAATGGTCGCGTATTCCGCACTTCTATT
ACAATTACTATGTGTATCAGTATGCGACAGGGTACAGCGCTGCCCAAGCATTAAGCAGCCAGATTTTGAAGGAAGGAAAG
CCGGCGGTTGACCGTTATATTGACTTCCTGAAAGCGGGAAGCTCACAATACCCGATTGATGTCCTGAAAAAAGCGGGTGT
TGATATGACGTCTCCAGAGCCAATCGAAGCCGCGTGCAAAATGTTTGAAGAAAAACTTGATGAAATGGAAGAGCTGCTGA
TGAAAGTCAAGCAGTCTTAA

Domains

Predicted by InterProScan.

Oligopeptidase F (Peptidase_M3_N)

(130-199)

Peptidase family M3 (Peptidase_M3)

(221-600)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

48.822

95.961

0.469