Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   P5661_RS04115 Genome accession   NZ_CP120600
Coordinates   803515..804231 (+) Length   238 a.a.
NCBI ID   WP_046380854.1    Uniprot ID   -
Organism   Bacillus subtilis strain PRO112     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 798515..809231
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5661_RS04095 (P5661_04095) - 799420..799692 (-) 273 Protein_753 spore gernimation protein -
  P5661_RS04100 (P5661_04100) - 799954..800133 (-) 180 Protein_754 spore germination protein -
  P5661_RS04105 (P5661_04105) treP 800326..801738 (+) 1413 WP_003233682.1 PTS system trehalose-specific EIIBC component -
  P5661_RS04110 (P5661_04110) treC 801809..803494 (+) 1686 WP_277709327.1 alpha,alpha-phosphotrehalase -
  P5661_RS04115 (P5661_04115) treR 803515..804231 (+) 717 WP_046380854.1 trehalose operon repressor Regulator
  P5661_RS04120 (P5661_04120) hypO 804371..805036 (+) 666 WP_014476144.1 NAD(P)H-dependent oxidoreductase -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27869.83 Da        Isoelectric Point: 7.1737

>NTDB_id=732933 P5661_RS04115 WP_046380854.1 803515..804231(+) (treR) [Bacillus subtilis strain PRO112]
MKVNKFITIYKDIAQQIEGGRWKAEEILPSEHELTAQYGTSRETVRKALHMLAQNGYIQKIRGKGSVVLNREKMQFPVSG
LVSFKELAQTLGKETKTTVHKFGLEPPSELIQKQLRANLDDDIWEVIRSRKIDGEHVILDKDYFFRKHVPHLTKEICENS
IYEYIEGELGLSISYAQKEIVAEPCTDEDRELLDLRGYDHMVVVRNYVFLEDTSLFQYTESRHRLDKFRFVDFARRGR

Nucleotide


Download         Length: 717 bp        

>NTDB_id=732933 P5661_RS04115 WP_046380854.1 803515..804231(+) (treR) [Bacillus subtilis strain PRO112]
ATGAAGGTGAATAAATTCATCACAATTTATAAAGACATCGCACAGCAAATTGAAGGCGGCCGATGGAAAGCGGAGGAGAT
TCTTCCGTCTGAACATGAGTTGACCGCACAGTACGGTACATCAAGAGAAACGGTCCGAAAGGCGCTTCATATGCTCGCGC
AAAACGGTTATATCCAGAAAATCAGGGGAAAAGGCTCCGTCGTGCTCAATCGTGAAAAAATGCAGTTTCCCGTTTCGGGC
CTTGTCAGCTTCAAGGAGCTCGCGCAAACGCTTGGCAAAGAAACGAAAACAACTGTACACAAATTCGGGCTGGAGCCTCC
GTCAGAGCTGATCCAAAAACAGCTCCGGGCCAATCTGGATGACGACATCTGGGAAGTCATCAGGTCTAGAAAGATTGACG
GGGAACATGTGATTTTGGACAAGGATTACTTTTTCAGAAAGCATGTCCCTCACTTGACGAAAGAAATTTGTGAAAACTCC
ATATATGAATATATAGAAGGAGAGCTCGGTCTTTCGATCAGTTACGCCCAAAAAGAAATTGTCGCCGAGCCGTGTACGGA
CGAGGACAGAGAGCTGCTCGATTTACGCGGCTATGACCATATGGTCGTGGTGAGAAACTACGTCTTTTTGGAGGATACCA
GTTTGTTTCAATATACGGAAAGCAGACACCGTCTCGACAAATTCCGATTTGTTGATTTTGCGCGGCGGGGGAGATGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(8-68)

UTRA domain (UTRA)

(91-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

42.373

99.16

0.42