Detailed information NTG0732922

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PALA6_RS04715
• Genome accession: NZ_CP104867
• Coordinates: 980970..981842 (-)
• Length: 290 a.a.
• NCBI ID: WP_003116251.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain PALA6
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 975970..986842

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PALA6_RS04670 (PALA6_00929)	-	976831..977001 (-)	171	WP_003094672.1	DUF3094 family protein	-
PALA6_RS04675 (PALA6_00930)	-	977027..977476 (-)	450	WP_003161439.1	MOSC domain-containing protein	-
PALA6_RS04680 (PALA6_00931)	-	977473..978102 (-)	630	WP_003094668.1	DUF1780 domain-containing protein	-
PALA6_RS04685 (PALA6_00932)	-	978235..978660 (+)	426	WP_003116252.1	GNAT family N-acetyltransferase	-
PALA6_RS04690 (PALA6_00933)	-	978657..979127 (+)	471	WP_003094664.1	hypothetical protein	-
PALA6_RS04695 (PALA6_00934)	-	979124..979813 (+)	690	WP_003103868.1	energy-coupling factor ABC transporter permease	-
PALA6_RS04700 (PALA6_00935)	-	979919..980128 (+)	210	WP_003094660.1	hypothetical protein	-
PALA6_RS04705 (PALA6_00936)	yacG	980165..980365 (-)	201	WP_003094656.1	DNA gyrase inhibitor YacG	-
PALA6_RS04710 (PALA6_00937)	coaE	980362..980973 (-)	612	WP_003112838.1	dephospho-CoA kinase	-
PALA6_RS04715 (PALA6_00938)	pilD	980970..981842 (-)	873	WP_003116251.1	type IV prepilin peptidase/methyltransferase PilD	Machinery gene
PALA6_RS04720 (PALA6_00939)	pilC	981845..983062 (-)	1218	WP_003116250.1	type II secretion system F family protein	Machinery gene
PALA6_RS04725 (PALA6_00940)	pilB	983066..984769 (-)	1704	WP_003116249.1	type IV-A pilus assembly ATPase PilB	Machinery gene
PALA6_RS04730	-	984998..985537 (+)	540	WP_003116248.1	pilin	-
PALA6_RS04735 (PALA6_00941)	-	985601..986299 (+)	699	WP_023121720.1	hypothetical protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31871.89 Da
• Isoelectric Point: 7.3454

>NTDB_id=732922 PALA6_RS04715 WP_003116251.1 980970..981842(-) (pilD) [Pseudomonas aeruginosa strain PALA6]
MELLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK

Nucleotide

• Length: 873 bp

>NTDB_id=732922 PALA6_RS04715 WP_003116251.1 980970..981842(-) (pilD) [Pseudomonas aeruginosa strain PALA6]
ATGGAACTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCTATCCTCCTCGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.017	99.655	0.548
pilD	Vibrio campbellii strain DS40M4	53.497	98.621	0.528
pilD	Acinetobacter nosocomialis M2	50.352	97.931	0.493
pilD	Acinetobacter baumannii D1279779	50.352	97.931	0.493
pilD	Neisseria gonorrhoeae MS11	49.281	95.862	0.472