Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   PALA4_RS26305 Genome accession   NZ_CP104866
Coordinates   5633401..5633958 (+) Length   185 a.a.
NCBI ID   WP_003110422.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PALA4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5628401..5638958
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PALA4_RS26285 (PALA4_05193) pilR 5629677..5631014 (+) 1338 WP_003110427.1 two-component system response regulator PilR Regulator
  PALA4_RS26290 (PALA4_05194) thiO 5631060..5632154 (-) 1095 WP_009316267.1 glycine oxidase ThiO -
  PALA4_RS26295 (PALA4_05195) - 5632289..5632798 (+) 510 WP_003110424.1 GspH/FimT family pseudopilin -
  PALA4_RS26300 (PALA4_05196) - 5632904..5633410 (+) 507 WP_003110423.1 GspH/FimT family pseudopilin -
  PALA4_RS26305 (PALA4_05197) pilV 5633401..5633958 (+) 558 WP_003110422.1 type 4a pilus minor pilin PilV Machinery gene
  PALA4_RS26310 (PALA4_05198) pilW 5633955..5634779 (+) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  PALA4_RS26315 (PALA4_05199) pilX 5634776..5635363 (+) 588 WP_003094700.1 type 4a pilus minor pilin PilX -
  PALA4_RS26320 (PALA4_05200) pilY1 5635375..5638860 (+) 3486 WP_003110421.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20072.23 Da        Isoelectric Point: 7.9204

>NTDB_id=732904 PALA4_RS26305 WP_003110422.1 5633401..5633958(+) (pilV) [Pseudomonas aeruginosa strain PALA4]
MLLKSRHKPLYQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLMSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=732904 PALA4_RS26305 WP_003110422.1 5633401..5633958(+) (pilV) [Pseudomonas aeruginosa strain PALA4]
ATGCTATTGAAATCGCGGCACAAGCCGCTGTACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGTATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGATGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTGGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTTGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(12-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

98.378

100

0.984