Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   PALA2_RS23540 Genome accession   NZ_CP104865
Coordinates   5038653..5039177 (+) Length   174 a.a.
NCBI ID   WP_003116261.1    Uniprot ID   Q7WZP2
Organism   Pseudomonas aeruginosa strain PALA2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5033653..5044177
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PALA2_RS23520 (PALA2_04675) pilR 5034915..5036252 (+) 1338 WP_003110427.1 two-component system response regulator PilR Regulator
  PALA2_RS23525 (PALA2_04676) thiO 5036298..5037392 (-) 1095 WP_023103512.1 glycine oxidase ThiO -
  PALA2_RS23530 (PALA2_04677) - 5037532..5038032 (+) 501 WP_003116259.1 GspH/FimT family pseudopilin -
  PALA2_RS23535 (PALA2_04678) - 5038155..5038643 (+) 489 WP_003141552.1 GspH/FimT family pseudopilin -
  PALA2_RS23540 (PALA2_04679) pilV 5038653..5039177 (+) 525 WP_003116261.1 type IV pilus modification protein PilV Machinery gene
  PALA2_RS23545 (PALA2_04680) - 5039186..5040001 (+) 816 WP_003116262.1 PilW family protein -
  PALA2_RS23550 (PALA2_04681) - 5039998..5040603 (+) 606 WP_003116263.1 pilus assembly PilX family protein -
  PALA2_RS23555 (PALA2_04682) - 5040617..5044093 (+) 3477 WP_031668590.1 pilus assembly protein -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 18763.51 Da        Isoelectric Point: 4.9113

>NTDB_id=732871 PALA2_RS23540 WP_003116261.1 5038653..5039177(+) (pilV) [Pseudomonas aeruginosa strain PALA2]
MSRETGFSMIEVLVALVLISIGVLGMVAMQGRTIQYTQESVQRNAAAMLASDLMEIMRADPDAVLNLRAQLREDSVYYKA
KGSDFPAAPARCAPLPADAKERLGCWAQQASKDLPGASALLNSQFYICRSPTPGTCDNTKGSAIEIQVAWRAMDGACFNA
SDSTLCTYSVRSEL

Nucleotide


Download         Length: 525 bp        

>NTDB_id=732871 PALA2_RS23540 WP_003116261.1 5038653..5039177(+) (pilV) [Pseudomonas aeruginosa strain PALA2]
ATGTCTCGAGAAACGGGTTTCAGCATGATCGAAGTACTGGTTGCTCTGGTGCTGATCAGCATTGGCGTACTGGGCATGGT
TGCCATGCAAGGGCGCACGATCCAGTACACGCAGGAGTCGGTACAACGCAATGCCGCAGCAATGCTTGCTAGCGACCTGA
TGGAAATAATGCGTGCGGACCCAGATGCCGTACTCAATCTACGCGCCCAACTACGCGAAGACTCGGTCTACTACAAGGCC
AAGGGCAGCGACTTTCCCGCAGCCCCAGCGCGCTGCGCGCCATTGCCAGCAGATGCTAAGGAACGTCTCGGCTGCTGGGC
CCAACAGGCCTCGAAAGACTTGCCGGGAGCCTCCGCACTCTTGAATAGCCAATTCTACATTTGTCGCAGCCCAACCCCGG
GTACCTGCGACAACACCAAAGGCTCGGCCATCGAAATCCAGGTTGCCTGGCGAGCCATGGATGGAGCGTGTTTCAACGCC
TCTGACTCCACCTTGTGCACCTACAGCGTCCGCTCCGAATTGTGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q7WZP2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

59.429

100

0.598