Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   Aargi30884_RS04995 Genome accession   NZ_AP019695
Coordinates   941540..943396 (-) Length   618 a.a.
NCBI ID   WP_115715274.1    Uniprot ID   A0A6N4TH43
Organism   Amedibacterium intestinale strain N6H1-5     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 936540..948396
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Aargi30884_RS04970 (Aargi30884_09770) - 936561..938201 (+) 1641 WP_118277870.1 putative ABC transporter permease subunit -
  Aargi30884_RS04975 (Aargi30884_09780) - 938213..938767 (+) 555 WP_118277869.1 DUF3783 domain-containing protein -
  Aargi30884_RS04980 (Aargi30884_09790) - 938929..939096 (-) 168 WP_163051626.1 hypothetical protein -
  Aargi30884_RS04985 (Aargi30884_09800) - 939171..940118 (-) 948 WP_163051628.1 hypothetical protein -
  Aargi30884_RS04990 (Aargi30884_09810) - 940421..941425 (+) 1005 WP_163051630.1 C45 family autoproteolytic acyltransferase/hydolase -
  Aargi30884_RS04995 (Aargi30884_09820) rcrQ 941540..943396 (-) 1857 WP_115715274.1 ABC transporter ATP-binding protein Regulator
  Aargi30884_RS05000 (Aargi30884_09830) - 943389..945653 (-) 2265 WP_118277032.1 ABC transporter ATP-binding protein -
  Aargi30884_RS05005 (Aargi30884_09840) - 945656..946126 (-) 471 WP_118277031.1 MarR family winged helix-turn-helix transcriptional regulator -
  Aargi30884_RS05010 (Aargi30884_09850) - 946279..947538 (-) 1260 WP_163051632.1 hypothetical protein -

Sequence

Protein


Download         Length: 618 a.a.        Molecular weight: 68839.44 Da        Isoelectric Point: 5.5158

>NTDB_id=73286 Aargi30884_RS04995 WP_115715274.1 941540..943396(-) (rcrQ) [Amedibacterium intestinale strain N6H1-5]
MSKTNRPSQTMRHGPMRGRGPAEKAKDFKGTMKKLIGYLKPYHLNIIVAFIFTAFSVVFMVIGPKILGNATTEIANGLSA
KLSGTGGIDFNRIAEILMMLIGLYLISVLCNLIQSWLMAGVAQKVTYNLRNEMAAKVDRLPFSYFDTHSNGDILSRFSND
ADLIQQSMSTALAQLLSAAVQLVGFLIMMLSISWQMTLVALIVVPLSLILVTTVVKHSQKFFAKQQASLGNVNGHIEEMY
SAHLIMKAFNGEERSISEFNELNDELYNSAWKSQFLSGLMQPISIFVGNLGYVGVVILGGYLTMNGIIAIGDIQSFITYV
RSFNQPISSIAQNMNVLQSTAAAAERVFEFLDETEEIPETSTPVEVFDEHGETKIKGQVTFENVHFGYTPEKTIINDFSM
YIKPGKKIAIVGPTGAGKTTIIKLLMRFYELNSGAIYVDGIKTTDMRRSDLRSLFGMVLQDAWLFNGTVMENLRYGKLDA
TDEEVMKAADAAYVDHFIRTLEHGYDTMINEESSNISQGQKQLLTIARAFLADPKILILDEATSSVDTRTEVLIQKGMEK
LMENRTSFVIAHRLSTIRDADLILVMKDGDIVEAGNHEDLMKENGFYTQLYNSQFEEE

Nucleotide


Download         Length: 1857 bp        

>NTDB_id=73286 Aargi30884_RS04995 WP_115715274.1 941540..943396(-) (rcrQ) [Amedibacterium intestinale strain N6H1-5]
ATGAGTAAAACAAATCGTCCTTCTCAGACTATGAGACATGGTCCTATGAGAGGCAGGGGACCAGCTGAAAAAGCAAAAGA
TTTTAAAGGTACTATGAAAAAACTGATTGGGTATTTAAAACCTTATCATTTAAATATTATTGTTGCGTTTATCTTTACTG
CCTTTTCTGTTGTATTTATGGTTATAGGACCTAAAATTTTAGGAAATGCGACAACGGAAATTGCAAATGGCTTATCCGCA
AAATTAAGTGGAACTGGTGGCATTGATTTCAATCGTATTGCGGAAATCTTAATGATGTTAATTGGATTGTATCTGATTTC
TGTATTATGTAACCTGATACAAAGCTGGTTAATGGCAGGTGTTGCACAGAAGGTAACTTATAATCTTCGTAATGAAATGG
CTGCCAAGGTTGATCGTTTGCCATTTAGCTATTTTGATACGCACTCTAATGGTGATATCTTATCTCGTTTCTCAAATGAT
GCCGATTTGATTCAGCAGTCTATGAGTACTGCCTTGGCACAGTTGTTAAGTGCTGCAGTACAGCTTGTTGGATTCTTGAT
TATGATGTTGTCAATCAGCTGGCAGATGACTTTAGTGGCATTGATTGTTGTGCCATTGTCTTTGATTTTGGTTACAACGG
TTGTAAAACACTCTCAAAAATTCTTTGCGAAACAGCAGGCTTCTTTAGGAAATGTAAATGGTCATATTGAAGAAATGTAC
AGTGCGCATTTGATCATGAAAGCATTTAATGGAGAAGAAAGAAGTATTTCTGAATTTAATGAGTTAAATGATGAACTTTA
TAATTCCGCATGGAAATCCCAGTTTTTAAGTGGTTTGATGCAGCCAATCAGTATTTTTGTAGGAAACTTGGGATATGTCG
GTGTTGTTATCTTAGGTGGATATCTAACAATGAATGGTATTATTGCGATTGGGGATATTCAATCCTTTATTACGTATGTA
AGAAGTTTTAATCAGCCAATTTCTTCTATTGCACAGAATATGAATGTATTGCAGTCTACAGCTGCAGCTGCAGAACGTGT
ATTCGAATTTTTGGATGAAACAGAAGAAATTCCAGAAACATCTACACCAGTAGAAGTCTTTGATGAACATGGTGAAACAA
AGATCAAAGGACAGGTAACATTTGAAAATGTACATTTTGGCTATACTCCTGAAAAAACAATTATCAATGATTTTTCCATG
TATATTAAACCAGGGAAAAAGATTGCGATTGTTGGTCCTACCGGTGCTGGTAAGACAACGATTATTAAATTGTTAATGCG
TTTCTATGAATTAAACAGTGGGGCTATTTATGTAGATGGCATTAAAACAACCGATATGCGAAGAAGTGATTTGCGTTCTT
TGTTTGGTATGGTACTGCAGGATGCATGGCTGTTTAATGGAACGGTAATGGAAAATCTTCGTTATGGAAAATTAGATGCA
ACAGATGAAGAAGTTATGAAAGCGGCAGATGCGGCTTATGTAGACCATTTCATTCGTACTTTGGAACATGGTTATGATAC
AATGATCAATGAAGAATCCAGCAATATTTCACAGGGACAAAAACAGCTGTTAACAATTGCCAGAGCTTTCTTGGCAGATC
CTAAGATTTTAATTCTTGATGAAGCAACATCTTCTGTAGATACTCGTACAGAAGTATTGATTCAAAAAGGTATGGAAAAA
CTAATGGAAAATCGTACAAGTTTTGTGATTGCCCATCGTTTATCTACGATTCGTGATGCAGATTTAATTCTTGTCATGAA
AGATGGAGATATTGTAGAAGCAGGAAATCATGAAGACTTAATGAAAGAAAATGGTTTCTATACACAGTTATACAACTCAC
AGTTTGAAGAAGAATAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(46-326)

ABC transporter (ABC_tran)

(396-544)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6N4TH43

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

50.508

95.469

0.482

Multiple sequence alignment