Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   P5622_RS15675 Genome accession   NZ_CP120598
Coordinates   3005946..3006377 (-) Length   143 a.a.
NCBI ID   WP_003231834.1    Uniprot ID   G4NVD0
Organism   Bacillus subtilis strain PRO115     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 3000946..3011377
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5622_RS15665 (P5622_15665) hexA 3002430..3005006 (-) 2577 WP_003244841.1 DNA mismatch repair protein MutS Machinery gene
  P5622_RS15670 (P5622_15670) cotE 3005139..3005684 (-) 546 WP_003231833.1 outer spore coat protein CotE -
  P5622_RS15675 (P5622_15675) ymcA 3005946..3006377 (-) 432 WP_003231834.1 regulatory iron-sulfur-containing complex subunit RicA Regulator
  P5622_RS15680 (P5622_15680) miaB 3006379..3007908 (-) 1530 WP_003244831.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  P5622_RS15685 (P5622_15685) kbl 3008056..3009234 (-) 1179 WP_003231837.1 glycine C-acetyltransferase -
  P5622_RS15690 (P5622_15690) tdh 3009247..3010290 (-) 1044 WP_277687290.1 L-threonine 3-dehydrogenase -
  P5622_RS15695 (P5622_15695) spoVS 3010555..3010815 (-) 261 WP_003154135.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16166.27 Da        Isoelectric Point: 5.0437

>NTDB_id=732858 P5622_RS15675 WP_003231834.1 3005946..3006377(-) (ymcA) [Bacillus subtilis strain PRO115]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENDKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQE
ELEEIPVIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITSTGGDLLKGETGSKVKHSNNSCSL

Nucleotide


Download         Length: 432 bp        

>NTDB_id=732858 P5622_RS15675 WP_003231834.1 3005946..3006377(-) (ymcA) [Bacillus subtilis strain PRO115]
ATGACGCTCTACTCAAAAAAAGACATTGTGCAGCAGGCTCGAAACCTTGCAAAAATGATTTCTGAAACAGAAGAGGTTGA
TTTTTTCAAACGGGCTGAAGCGCAAATCAATGAGAATGACAAAGTGTCCACAATCGTTAATCAGATTAAAGCCCTGCAAA
AGCAGGCTGTCAATCTGAAGCATTATGAAAAGCATGAAGCGCTCAAACAAGTAGAAGCAAAAATTGACGCGCTGCAAGAA
GAGCTTGAAGAGATTCCTGTTATCCAGGAATTCAGAGACTCGCAAATGGAAGTAAATGACCTACTGCAGCTCGTTGCACA
CACCATTTCCAACCAAGTCACAAATGAAATCATCACATCAACCGGAGGCGACCTGCTGAAAGGGGAAACCGGTTCAAAGG
TGAAGCATTCAAATAACAGCTGTTCTCTCTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVD0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

100

100

1