Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   P5622_RS09175 Genome accession   NZ_CP120598
Coordinates   1763256..1763966 (+) Length   236 a.a.
NCBI ID   WP_003229230.1    Uniprot ID   O34977
Organism   Bacillus subtilis strain PRO115     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1758256..1768966
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5622_RS09155 (P5622_09155) ytfP 1758735..1759997 (-) 1263 WP_003229222.1 NAD(P)/FAD-dependent oxidoreductase -
  P5622_RS09160 (P5622_09160) murJ 1760199..1761833 (+) 1635 WP_003229224.1 lipid II flippase MurJ -
  P5622_RS09165 (P5622_09165) rsuA 1761902..1762621 (+) 720 WP_003229226.1 pseudouridine synthase -
  P5622_RS09170 (P5622_09170) ytzE 1762744..1762965 (-) 222 WP_003152337.1 DeoR family transcriptional regulator -
  P5622_RS09175 (P5622_09175) pptA 1763256..1763966 (+) 711 WP_003229230.1 ABC transporter ATP-binding protein Regulator
  P5622_RS09180 (P5622_09180) - 1763963..1764544 (+) 582 WP_277715565.1 ABC transporter permease -
  P5622_RS09185 (P5622_09185) - 1764710..1765120 (+) 411 WP_277715566.1 ABC transporter permease -
  P5622_RS09190 (P5622_09190) pbuO 1765160..1766458 (-) 1299 WP_003229234.1 hypoxanthine/guanine permease PbuO -
  P5622_RS09195 (P5622_09195) pepV 1766555..1767945 (+) 1391 Protein_1748 dipeptidase PepV -
  P5622_RS09200 (P5622_09200) cysK 1767979..1768914 (-) 936 WP_003229237.1 cysteine synthase A -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 26506.56 Da        Isoelectric Point: 5.3508

>NTDB_id=732819 P5622_RS09175 WP_003229230.1 1763256..1763966(+) (pptA) [Bacillus subtilis strain PRO115]
MTNLLEASIEQAGYTSRKKVLTDVFLEVRKGELVGLIGANGAGKSTAIKAILGLSEDFKGHIAWNDCSFAYIPEHPSFYE
ELTLWEHLDLISTLHGIEESEFAHRAQSLLQTFSLDHVKHELPVTFSKGMQQKLMLIQAFLSKPDMYVIDEPFIGLDPIS
TKRFVDMLKAEKERGAGILMCTHVLDTAEKICDRFYMIEKGSLFLQGTLKDVQDKTGLEGQSLLDCFYKAVQGDRL

Nucleotide


Download         Length: 711 bp        

>NTDB_id=732819 P5622_RS09175 WP_003229230.1 1763256..1763966(+) (pptA) [Bacillus subtilis strain PRO115]
TTGACAAATTTGCTTGAAGCTTCAATAGAACAGGCCGGGTATACAAGCCGAAAAAAAGTGCTCACCGATGTTTTTCTGGA
AGTCAGAAAAGGGGAACTGGTTGGACTGATCGGAGCTAACGGCGCAGGAAAAAGCACCGCAATCAAGGCGATACTCGGCC
TTTCAGAAGATTTTAAAGGGCATATTGCCTGGAACGACTGTTCATTTGCATATATTCCGGAGCATCCGTCCTTCTACGAA
GAACTGACGCTGTGGGAGCATTTGGATCTGATCAGCACACTTCACGGCATTGAAGAGAGTGAATTTGCGCATCGGGCCCA
AAGCCTGCTGCAGACGTTTTCGCTAGATCATGTCAAACATGAGCTGCCTGTCACCTTTTCGAAGGGCATGCAGCAAAAAC
TAATGCTTATCCAGGCCTTTCTCTCTAAGCCGGATATGTATGTGATTGATGAACCGTTTATCGGCCTTGATCCGATATCG
ACGAAACGCTTTGTGGACATGCTTAAGGCTGAAAAAGAACGTGGAGCCGGAATTCTTATGTGCACGCATGTACTCGATAC
CGCGGAAAAAATCTGTGACCGGTTTTATATGATTGAGAAAGGTTCATTATTTCTCCAAGGCACGTTAAAAGATGTTCAGG
ACAAGACCGGATTAGAGGGGCAGTCATTGCTTGACTGTTTTTATAAGGCAGTTCAAGGTGATCGGCTATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(21-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB O34977

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

44.017

99.153

0.436
  pptA Streptococcus thermophilus LMD-9

43.59

99.153

0.432