Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   N7E69_RS17420 Genome accession   NZ_CP104858
Coordinates   3650981..3651586 (+) Length   201 a.a.
NCBI ID   WP_001202375.1    Uniprot ID   A0A5I0N148
Organism   Salmonella sp. 3C     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3645981..3656586
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N7E69_RS17400 (N7E69_17400) - 3646376..3648136 (-) 1761 WP_000156448.1 Lon protease family protein -
  N7E69_RS17405 (N7E69_17405) matP 3648322..3648774 (+) 453 WP_000877172.1 macrodomain Ter protein MatP -
  N7E69_RS17410 (N7E69_17410) ompA 3648846..3649898 (-) 1053 WP_001674965.1 porin OmpA -
  N7E69_RS17415 (N7E69_17415) sulA 3650255..3650764 (-) 510 WP_000288733.1 SOS-induced cell division inhibitor SulA -
  N7E69_RS17420 (N7E69_17420) sxy/tfoX 3650981..3651586 (+) 606 WP_001202375.1 TfoX/Sxy family DNA transformation protein Regulator
  N7E69_RS17425 (N7E69_17425) yccS 3651573..3653726 (-) 2154 WP_000950876.1 YccS family putative transporter -
  N7E69_RS17430 (N7E69_17430) - 3653745..3654191 (-) 447 WP_001261222.1 YccF domain-containing protein -
  N7E69_RS17435 (N7E69_17435) helD 3654315..3656369 (+) 2055 WP_000420503.1 DNA helicase IV -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23174.94 Da        Isoelectric Point: 8.7403

>NTDB_id=732797 N7E69_RS17420 WP_001202375.1 3650981..3651586(+) (sxy/tfoX) [Salmonella sp. 3C]
MRALSYDRIYKSQEYLASLGTIQYRSLFGSYSLTVEDTVFAMVANGELYLRACEESVPYCVKHPPAWLMFMKCGRPVMLN
YYRVDESLWRDQQQLVRLSKYSLDAAMKEKHSRILQHRLKDLPNMTFHLETLLNESGIKDENMLRILGAKMCWLRLRQSN
PLLTVKVLYALEGAIVGVHEAALPASRRQELADWAHSLTAG

Nucleotide


Download         Length: 606 bp        

>NTDB_id=732797 N7E69_RS17420 WP_001202375.1 3650981..3651586(+) (sxy/tfoX) [Salmonella sp. 3C]
ATGAGAGCACTCTCTTATGACAGGATCTATAAATCGCAAGAATATTTGGCCTCTTTGGGGACGATCCAGTATCGATCTTT
ATTCGGTAGCTATAGTCTGACCGTGGAGGATACCGTCTTTGCGATGGTGGCTAATGGCGAGCTTTATCTCCGCGCCTGTG
AAGAAAGCGTACCCTACTGTGTGAAGCATCCCCCCGCCTGGCTCATGTTTATGAAATGTGGACGTCCCGTTATGCTCAAC
TATTACCGGGTGGATGAAAGCCTGTGGCGCGATCAGCAGCAGCTGGTACGTTTATCGAAGTATTCTCTTGACGCGGCAAT
GAAGGAAAAACACAGCCGTATTTTACAGCACAGACTCAAAGATCTTCCCAATATGACCTTCCATCTGGAAACATTGCTCA
ATGAGTCAGGGATAAAGGACGAAAATATGTTACGCATACTGGGCGCGAAAATGTGCTGGCTAAGGTTGCGACAAAGCAAT
CCCTTGCTGACGGTGAAAGTTTTGTATGCCCTGGAAGGCGCAATTGTCGGCGTACATGAAGCGGCGCTCCCGGCGAGTCG
TCGCCAGGAGCTTGCCGACTGGGCTCATTCGCTTACGGCTGGGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5I0N148

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

75.879

99.005

0.751