Detailed information    

insolico Bioinformatically predicted

Overview

Name   subA/fin   Type   Machinery gene
Locus tag   P5622_RS02925 Genome accession   NZ_CP120598
Coordinates   559368..559598 (-) Length   76 a.a.
NCBI ID   WP_003243417.1    Uniprot ID   A0ABU0VCT2
Organism   Bacillus subtilis strain PRO115     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 554368..564598
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5622_RS02915 (P5622_02915) spoVT 555093..555629 (-) 537 WP_003218365.1 stage V sporulation protein T -
  P5622_RS02920 (P5622_02920) mfd 555765..559298 (-) 3534 WP_003243453.1 transcription-repair coupling factor -
  P5622_RS02925 (P5622_02925) subA/fin 559368..559598 (-) 231 WP_003243417.1 anti-sigma-F factor Fin Machinery gene
  P5622_RS02930 (P5622_02930) pth 559658..560224 (-) 567 WP_003226727.1 aminoacyl-tRNA hydrolase -
  P5622_RS02935 (P5622_02935) ctc 560331..560945 (-) 615 WP_003243443.1 50S ribosomal protein L25/general stress protein Ctc -
  P5622_RS02940 (P5622_02940) prs 561030..561984 (-) 955 Protein_539 ribose-phosphate diphosphokinase -
  P5622_RS02945 (P5622_02945) glmU 562007..563377 (-) 1371 WP_003226732.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  P5622_RS02950 (P5622_02950) spoVG 563570..563863 (-) 294 WP_003218346.1 septation regulator SpoVG -
  P5622_RS02955 (P5622_02955) ridA 564057..564434 (-) 378 WP_003226738.1 2-iminobutanoate/2-iminopropanoate deaminase -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8847.81 Da        Isoelectric Point: 5.3895

>NTDB_id=732786 P5622_RS02925 WP_003243417.1 559368..559598(-) (subA/fin) [Bacillus subtilis strain PRO115]
MALHYYCRHCGVKVGSLESSMVSTDSLGFQHLTNEERNDMISYKENGDVHVLTICEDCQEALDRNPHYHEYHTFIQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=732786 P5622_RS02925 WP_003243417.1 559368..559598(-) (subA/fin) [Bacillus subtilis strain PRO115]
ATGGCTTTGCATTATTATTGTCGTCATTGCGGAGTGAAAGTAGGCAGTCTCGAATCTTCAATGGTATCGACAGACTCACT
TGGATTTCAGCACTTAACAAATGAGGAAAGAAACGATATGATTTCTTATAAAGAAAATGGAGATGTCCATGTTTTGACGA
TATGTGAAGACTGCCAAGAGGCGCTTGACCGAAATCCGCATTACCACGAATATCACACATTTATTCAATAA

Domains

Predicted by InterProScan.

Anti-sigma-F factor Fin (Fin)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  subA/fin Bacillus subtilis subsp. subtilis str. 168

100

100

1