Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   P5628_RS20430 Genome accession   NZ_CP120577
Coordinates   3946915..3947604 (-) Length   229 a.a.
NCBI ID   WP_003243527.1    Uniprot ID   P42421
Organism   Bacillus subtilis strain PRO53     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3941915..3952604
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5628_RS20410 (P5628_20410) yxeA 3942820..3943167 (-) 348 WP_003227084.1 YxeA family protein -
  P5628_RS20415 (P5628_20415) yxdM 3943181..3945049 (-) 1869 WP_277715497.1 ABC transporter permease YxdM -
  P5628_RS20420 (P5628_20420) yxdL 3945024..3945797 (-) 774 WP_014115765.1 ABC transporter ATP-binding protein YxdL -
  P5628_RS20425 (P5628_20425) yxdK 3945941..3946918 (-) 978 WP_021481026.1 two-component system sensor histidine kinase YxdK -
  P5628_RS20430 (P5628_20430) braR 3946915..3947604 (-) 690 WP_003243527.1 two-component system response regulator YxdJ Regulator
  P5628_RS20435 (P5628_20435) iolJ 3947712..3948584 (-) 873 WP_064671730.1 6-phospho-5-dehydro-2-deoxy-D-gluconate aldolase -
  P5628_RS20440 (P5628_20440) iolI 3948605..3949441 (-) 837 WP_277709165.1 2-keto-myo-inositol isomerase -
  P5628_RS20445 (P5628_20445) iolH 3949527..3950396 (-) 870 WP_015250852.1 sugar phosphate isomerase/epimerase -
  P5628_RS20450 (P5628_20450) iolG 3950416..3951450 (-) 1035 WP_003244482.1 bifunctional inositol 2-dehydrogenase/D-chiro-inositol 1-dehydrogenase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26600.34 Da        Isoelectric Point: 4.8564

>NTDB_id=732759 P5628_RS20430 WP_003243527.1 3946915..3947604(-) (braR) [Bacillus subtilis strain PRO53]
MNKIMIVEDSEDIRGLLQNYLEKYGYQTVVAADFTAVLDVFLREKPDVVLLDINLPAYDGYYWCRQIRQHSTSPIIFISA
RSGEMDQVMAIENGGDDYIEKPFSYDIVLAKIKSQIRRAYGEYAAKQGEKVVEYAGVQLFVERFELRFQDEKSELSKKES
KLLEVLLERGEKVTSRDRLMEKTWDTDIFIDDNTLNVYITRLRKKLRELNAPVSIEAVRGEGYQLRAQS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=732759 P5628_RS20430 WP_003243527.1 3946915..3947604(-) (braR) [Bacillus subtilis strain PRO53]
TTGAATAAAATCATGATTGTGGAAGACAGTGAAGACATTCGCGGACTATTGCAGAATTACCTTGAAAAATACGGATATCA
AACAGTGGTCGCCGCGGATTTTACAGCTGTTCTTGATGTCTTTTTGCGGGAAAAGCCCGATGTGGTGCTGCTTGATATCA
ATTTGCCGGCATATGACGGATATTATTGGTGCCGGCAGATCCGCCAGCACTCCACAAGCCCGATCATCTTTATTTCTGCC
AGAAGCGGGGAAATGGATCAGGTGATGGCGATTGAAAATGGGGGAGACGATTATATCGAAAAACCGTTTTCTTATGATAT
TGTGCTTGCGAAAATCAAAAGCCAGATCCGGAGGGCGTACGGGGAGTACGCCGCAAAGCAGGGAGAGAAAGTGGTTGAAT
ATGCTGGCGTTCAGCTCTTTGTGGAACGGTTTGAACTGCGTTTTCAGGATGAAAAAAGCGAGCTTTCTAAAAAAGAAAGC
AAGCTTTTGGAAGTGCTGCTTGAGCGGGGAGAAAAGGTGACGAGTCGGGACCGTCTCATGGAAAAGACGTGGGACACCGA
CATATTCATCGATGATAATACACTTAACGTGTATATCACGCGGCTCAGAAAAAAACTGCGGGAGCTGAATGCGCCTGTTT
CTATTGAAGCGGTGCGGGGCGAAGGCTACCAGCTGAGGGCGCAGTCATGA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-225)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P42421

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

41.704

97.38

0.406