Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   P5628_RS15280 Genome accession   NZ_CP120577
Coordinates   2920380..2921090 (-) Length   236 a.a.
NCBI ID   WP_120028490.1    Uniprot ID   -
Organism   Bacillus subtilis strain PRO53     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2915380..2926090
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5628_RS15260 (P5628_15260) cysK 2915431..2916366 (+) 936 WP_003229237.1 cysteine synthase A -
  P5628_RS15265 (P5628_15265) pepV 2916400..2917792 (-) 1393 Protein_2966 dipeptidase PepV -
  P5628_RS15270 (P5628_15270) pbuO 2917889..2919187 (+) 1299 WP_014480583.1 hypoxanthine/guanine permease PbuO -
  P5628_RS15275 (P5628_15275) ythQ 2919226..2920383 (-) 1158 WP_161986269.1 ABC transporter permease -
  P5628_RS15280 (P5628_15280) pptA 2920380..2921090 (-) 711 WP_120028490.1 ABC transporter ATP-binding protein Regulator
  P5628_RS15285 (P5628_15285) ytzE 2921380..2921601 (+) 222 WP_003152337.1 DeoR family transcriptional regulator -
  P5628_RS15290 (P5628_15290) rsuA 2921723..2922442 (-) 720 WP_277708906.1 pseudouridine synthase -
  P5628_RS15295 (P5628_15295) murJ 2922511..2924145 (-) 1635 WP_014480588.1 lipid II flippase MurJ -
  P5628_RS15300 (P5628_15300) ytfP 2924349..2925611 (+) 1263 WP_072173641.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 26529.64 Da        Isoelectric Point: 5.8478

>NTDB_id=732733 P5628_RS15280 WP_120028490.1 2920380..2921090(-) (pptA) [Bacillus subtilis strain PRO53]
MTNLLEASIEQAGYTSRKKVLTDVFLEVRKGELVGLIGANGAGKSTAIKAILGLSEDFKGHIAWNDCSFAYIPEHPSFYE
ELTLWEHLDLISTLHGIEGREFVHRAQSLLQTFSLDHVKHELPVTFSKGMQQKLMLIQAFLSKPDMYVIDEPFIGLDPIS
TKRFVDMLKAEKERGAGILMCTHVLDTAEKICDRFYMIEKGSLFLQGTLKDIQDKTGLEGQSLLDCFYKAVQGDRP

Nucleotide


Download         Length: 711 bp        

>NTDB_id=732733 P5628_RS15280 WP_120028490.1 2920380..2921090(-) (pptA) [Bacillus subtilis strain PRO53]
TTGACAAATTTGCTTGAAGCTTCAATAGAACAGGCCGGGTATACAAGCCGAAAAAAAGTGCTCACCGATGTTTTTCTGGA
AGTCAGAAAAGGGGAACTAGTTGGACTGATCGGAGCTAACGGCGCCGGAAAAAGCACCGCAATCAAGGCGATACTCGGCC
TTTCAGAAGATTTTAAAGGGCATATTGCCTGGAACGACTGTTCATTTGCATATATTCCGGAGCATCCGTCCTTTTACGAA
GAACTGACGCTGTGGGAGCATTTGGATCTGATCAGCACACTCCACGGCATTGAAGGGAGAGAATTTGTGCATCGGGCCCA
AAGCCTGCTGCAGACGTTTTCGCTTGATCATGTCAAACATGAGCTGCCTGTCACCTTTTCGAAGGGCATGCAGCAAAAAC
TAATGCTTATCCAGGCCTTTCTCTCTAAGCCGGATATGTATGTGATTGATGAACCGTTTATCGGCCTTGATCCGATATCG
ACGAAACGCTTTGTGGACATGCTTAAGGCTGAAAAAGAACGTGGAGCCGGAATTCTTATGTGCACGCATGTACTCGATAC
CGCGGAAAAAATCTGTGACCGGTTTTATATGATTGAGAAAGGTTCATTATTTCTCCAAGGCACGTTAAAAGATATTCAGG
ACAAGACCGGATTAGAGGGGCAGTCATTGCTTGACTGTTTTTATAAGGCAGTTCAAGGTGATCGGCCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(21-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

44.017

99.153

0.436
  pptA Streptococcus thermophilus LMD-9

43.59

99.153

0.432