Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   N6G78_RS13755 Genome accession   NZ_CP104855
Coordinates   2643842..2644588 (-) Length   248 a.a.
NCBI ID   WP_015384274.1    Uniprot ID   -
Organism   Bacillus subtilis strain TY-1     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2638842..2649588
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N6G78_RS13730 (N6G78_13730) mreC 2639248..2640120 (-) 873 WP_003222609.1 rod shape-determining protein MreC -
  N6G78_RS13735 (N6G78_13735) mreB 2640151..2641164 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  N6G78_RS13740 (N6G78_13740) radC 2641256..2641951 (-) 696 WP_015384272.1 RadC family protein -
  N6G78_RS13745 (N6G78_13745) maf 2641988..2642557 (-) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  N6G78_RS13750 (N6G78_13750) spoIIB 2642710..2643708 (-) 999 WP_015384273.1 stage II sporulation protein SpoIIB -
  N6G78_RS13755 (N6G78_13755) comC 2643842..2644588 (-) 747 WP_015384274.1 prepilin peptidase Machinery gene
  N6G78_RS13760 (N6G78_13760) folC 2644728..2646020 (-) 1293 WP_015384275.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  N6G78_RS13765 (N6G78_13765) valS 2646080..2648722 (-) 2643 WP_015483523.1 valine--tRNA ligase -
  N6G78_RS13770 (N6G78_13770) - 2649170..2649361 (+) 192 WP_003222590.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26378.00 Da        Isoelectric Point: 9.6195

>NTDB_id=732720 N6G78_RS13755 WP_015384274.1 2643842..2644588(-) (comC) [Bacillus subtilis strain TY-1]
MLSILFIFGLILGSFYYTAGCRIPLHLSIIAPRSSCPFCRRTLTPAELIPILSFLIQKGKCKSCGHMISFMYPAAELVTA
CLFAAAGIRFGTSLELFPALVFISLLIIVAVTDLHFMLIPNRILIFFLPFLAAARLISPLDSWYAGLLGAAAGFLFLAVI
AAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGAAAVLTGRLAKRQPLPFAPAIAAGSILAYLYGDSIIS
FYIKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=732720 N6G78_RS13755 WP_015384274.1 2643842..2644588(-) (comC) [Bacillus subtilis strain TY-1]
ATGCTATCCATTCTTTTTATCTTCGGGCTTATCCTTGGTTCTTTTTACTATACGGCCGGGTGCCGTATCCCCTTACATCT
ATCTATTATTGCGCCCCGTTCATCATGCCCGTTTTGCCGGCGGACATTAACTCCTGCAGAATTAATTCCCATCCTGTCAT
TCCTAATTCAAAAAGGTAAATGTAAAAGCTGCGGGCATATGATTTCTTTTATGTATCCCGCAGCAGAGCTTGTGACAGCG
TGTTTATTTGCCGCCGCAGGAATACGCTTTGGCACGTCGCTGGAACTGTTTCCCGCTCTGGTGTTTATCTCTCTTCTCAT
TATTGTTGCAGTGACAGATCTTCATTTTATGCTGATTCCAAATCGAATATTGATTTTCTTTCTTCCCTTTTTGGCGGCCG
CGAGATTGATTTCTCCGCTTGATTCCTGGTATGCAGGCCTGTTAGGTGCGGCAGCCGGATTTCTATTTCTGGCTGTAATT
GCCGCAATCACCCATGGAGGAGTAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTGTGCTTGGTGTGAAGAT
GCTGGCAGCTGCCTTTTTCTTTTCTGTTTTGATAGGTGCATTATATGGAGCGGCAGCTGTTCTGACTGGTAGACTCGCTA
AAAGGCAGCCGCTTCCCTTCGCCCCCGCTATAGCCGCAGGGAGCATTTTAGCCTATTTATACGGTGACTCTATCATTTCT
TTTTATATCAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(100-203)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

97.984

100

0.98