Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   FLY91_RS19540 Genome accession   NZ_AP024560
Coordinates   4061839..4062468 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain NIPH17_0020     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4056839..4067468
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FLY91_RS19525 helD 4057081..4059135 (-) 2055 WP_000420536.1 DNA helicase IV -
  FLY91_RS19530 yccF 4059258..4059704 (+) 447 WP_001261235.1 YccF domain-containing protein -
  FLY91_RS19535 yccS 4059714..4061876 (+) 2163 WP_000875023.1 YccS family putative transporter -
  FLY91_RS19540 sxy/tfoX 4061839..4062468 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  FLY91_RS19545 sulA 4062687..4063196 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  FLY91_RS19550 ompA 4063553..4064605 (+) 1053 WP_001361736.1 porin OmpA -
  FLY91_RS19555 matP 4064681..4065133 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  FLY91_RS19560 ycbZ 4065319..4067079 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=73271 FLY91_RS19540 WP_000839153.1 4061839..4062468(-) (sxy/tfoX) [Escherichia coli strain NIPH17_0020]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=73271 FLY91_RS19540 WP_000839153.1 4061839..4062468(-) (sxy/tfoX) [Escherichia coli strain NIPH17_0020]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment