Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   N6G78_RS11985 Genome accession   NZ_CP104855
Coordinates   2338690..2339493 (-) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus subtilis strain TY-1     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2333690..2344493
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N6G78_RS11960 (N6G78_11960) glpQB 2334833..2335564 (-) 732 WP_015384062.1 glycerophosphodiester phosphodiesterase -
  N6G78_RS11965 (N6G78_11965) yqiI 2335637..2336257 (-) 621 WP_072173938.1 N-acetylmuramoyl-L-alanine amidase family protein -
  N6G78_RS11970 (N6G78_11970) - 2336277..2336573 (-) 297 WP_015384064.1 hypothetical protein -
  N6G78_RS11975 (N6G78_11975) - 2336881..2337033 (+) 153 WP_015384065.1 hypothetical protein -
  N6G78_RS11980 (N6G78_11980) yqiG 2337106..2338224 (+) 1119 WP_015483421.1 NADH-dependent flavin oxidoreductase -
  N6G78_RS11985 (N6G78_11985) spo0A 2338690..2339493 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  N6G78_RS11990 (N6G78_11990) spoIVB 2339758..2341038 (-) 1281 WP_004398697.1 SpoIVB peptidase -
  N6G78_RS11995 (N6G78_11995) recN 2341213..2342943 (-) 1731 WP_014477300.1 DNA repair protein RecN Machinery gene
  N6G78_RS12000 (N6G78_12000) argR 2342980..2343429 (-) 450 WP_015384067.1 arginine repressor ArgR -
  N6G78_RS12005 (N6G78_12005) yqxC 2343527..2344372 (-) 846 WP_015384068.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=732701 N6G78_RS11985 WP_003226427.1 2338690..2339493(-) (spo0A) [Bacillus subtilis strain TY-1]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=732701 N6G78_RS11985 WP_003226427.1 2338690..2339493(-) (spo0A) [Bacillus subtilis strain TY-1]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGTTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATTTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTCAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGACAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTCAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGCCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTCGGTTATACTGTC
AGCATGACAAAAGCTAAACCGACAAATTCGGAATTCATTGCAATGGTTGCGGATAAGCTGAGATTAGAACATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1