Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   N6G78_RS11000 Genome accession   NZ_CP104855
Coordinates   2162795..2163415 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis strain TY-1     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2157795..2168415
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N6G78_RS10960 (N6G78_10960) ptsA 2158928..2159434 (-) 507 WP_015483368.1 PTS sugar transporter subunit IIA -
  N6G78_RS10965 (N6G78_10965) ypqA 2159572..2159991 (+) 420 WP_014477158.1 Hsp20/alpha crystallin family protein -
  N6G78_RS10970 (N6G78_10970) sppG 2160012..2160389 (-) 378 WP_014477159.1 YppG family protein -
  N6G78_RS10975 (N6G78_10975) yppF 2160576..2160764 (+) 189 WP_003230690.1 YppF family protein -
  N6G78_RS10980 (N6G78_10980) yppE 2160803..2161174 (-) 372 WP_015483369.1 YppE family protein -
  N6G78_RS10985 (N6G78_10985) yppD 2161220..2161465 (-) 246 WP_004398488.1 YppD family protein -
  N6G78_RS10990 (N6G78_10990) sspM 2161663..2161767 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  N6G78_RS10995 (N6G78_10995) yppC 2161792..2162754 (-) 963 WP_015383945.1 DUF2515 domain-containing protein -
  N6G78_RS11000 (N6G78_11000) recU 2162795..2163415 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  N6G78_RS11005 (N6G78_11005) ponA 2163437..2166187 (+) 2751 WP_015383947.1 transglycosylase domain-containing protein -
  N6G78_RS11010 (N6G78_11010) ypoC 2166263..2166757 (-) 495 WP_015383948.1 YpoC family protein -
  N6G78_RS11015 (N6G78_11015) nth 2166754..2167413 (-) 660 WP_015483371.1 endonuclease III -
  N6G78_RS11020 (N6G78_11020) dnaD 2167432..2168130 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=732700 N6G78_RS11000 WP_004399067.1 2162795..2163415(+) (recU) [Bacillus subtilis strain TY-1]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=732700 N6G78_RS11000 WP_004399067.1 2162795..2163415(+) (recU) [Bacillus subtilis strain TY-1]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1