Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   N6G78_RS06105 Genome accession   NZ_CP104855
Coordinates   1175359..1176312 (+) Length   317 a.a.
NCBI ID   WP_014476425.1    Uniprot ID   A0A0K6M9I2
Organism   Bacillus subtilis strain TY-1     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1170359..1181312
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N6G78_RS06080 (N6G78_06080) argF 1172190..1173149 (+) 960 WP_015383338.1 ornithine carbamoyltransferase -
  N6G78_RS06085 (N6G78_06085) yjzC 1173235..1173414 (+) 180 WP_003245356.1 YjzC family protein -
  N6G78_RS06090 (N6G78_06090) yjzD 1173460..1173645 (-) 186 WP_003245236.1 YjzD family protein -
  N6G78_RS06095 (N6G78_06095) - 1173896..1174630 (+) 735 WP_015483082.1 hypothetical protein -
  N6G78_RS06100 (N6G78_06100) - 1174712..1175269 (+) 558 WP_015383340.1 hypothetical protein -
  N6G78_RS06105 (N6G78_06105) med 1175359..1176312 (+) 954 WP_014476425.1 transcriptional regulator Med Regulator
  N6G78_RS06110 (N6G78_06110) comZ 1176327..1176518 (+) 192 WP_003224559.1 ComG operon transcriptional repressor ComZ Regulator
  N6G78_RS06115 (N6G78_06115) yjzB 1176548..1176784 (-) 237 WP_015383342.1 spore coat protein YjzB -
  N6G78_RS06120 (N6G78_06120) fabH 1176949..1177887 (+) 939 WP_015483083.1 beta-ketoacyl-ACP synthase III -
  N6G78_RS06125 (N6G78_06125) fabF 1177910..1179151 (+) 1242 WP_003244890.1 beta-ketoacyl-ACP synthase II -
  N6G78_RS06130 (N6G78_06130) yjaZ 1179227..1180012 (+) 786 WP_015383343.1 DUF2268 domain-containing protein -
  N6G78_RS06135 (N6G78_06135) appD 1180205..1181191 (+) 987 WP_015383344.1 oligopeptide ABC transporter ATP-binding protein AppD -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35310.84 Da        Isoelectric Point: 4.6031

>NTDB_id=732685 N6G78_RS06105 WP_014476425.1 1175359..1176312(+) (med) [Bacillus subtilis strain TY-1]
MITRLVMIFSVLLLLSGCGQTPFKGKIEKVGMLFPDTINDLVWGTKGYKGLLNIQSKYNVDVYYKEGVKTEEDIINAIED
FHKRGVNLLYGHGSEYAEVFNLVGEDYPDMEFVISNAKAKADNVTSVHFSGEAMGFFGGMTAAHMSKTNQVGVIASFTWQ
PEVDGFIKGAKYENPDIEVNTKYTDHWDDDTTAVKLYQKMKNEGADVVYPAGDGYNVPVIQQIKKDGLYAIGYVTDQSDL
GENTVLTSTVQNVDKAYEIIAEQFNKGTLEGGDHYYDLNTGVVEMGTFSPLVDKDFQQRIAKLIKTYNKTGELPKNE

Nucleotide


Download         Length: 954 bp        

>NTDB_id=732685 N6G78_RS06105 WP_014476425.1 1175359..1176312(+) (med) [Bacillus subtilis strain TY-1]
TTGATCACAAGGCTTGTCATGATCTTTTCTGTCCTCCTTTTATTGAGTGGATGTGGACAAACTCCGTTCAAAGGAAAAAT
TGAGAAGGTCGGCATGCTCTTTCCTGATACGATTAATGACCTCGTATGGGGCACAAAAGGGTATAAAGGATTACTGAATA
TACAATCCAAATACAATGTGGACGTCTATTATAAAGAAGGCGTTAAAACAGAAGAAGATATCATAAATGCGATTGAGGAT
TTTCATAAGAGGGGCGTCAATCTGCTCTACGGCCATGGGAGTGAATATGCTGAGGTGTTTAACCTGGTCGGCGAAGATTA
TCCAGATATGGAATTCGTCATTTCCAATGCGAAAGCGAAAGCTGATAATGTAACGAGTGTCCATTTTAGCGGGGAAGCAA
TGGGCTTTTTTGGAGGAATGACTGCTGCCCATATGTCGAAAACGAATCAGGTCGGTGTAATTGCCTCCTTTACGTGGCAG
CCTGAGGTTGACGGTTTTATCAAAGGGGCCAAGTATGAAAATCCGGATATAGAGGTAAATACGAAATATACGGATCATTG
GGATGATGATACAACAGCAGTAAAGCTTTATCAGAAAATGAAGAACGAAGGCGCGGATGTTGTGTATCCCGCCGGAGACG
GGTATAATGTTCCTGTTATTCAGCAAATCAAAAAAGACGGTCTTTATGCCATTGGCTACGTCACAGATCAATCGGATCTG
GGCGAGAATACCGTATTAACCAGCACGGTGCAAAATGTGGACAAGGCCTATGAAATCATTGCTGAACAATTTAATAAAGG
CACCCTTGAGGGCGGCGATCATTACTACGACCTGAATACGGGAGTCGTTGAGATGGGAACATTCAGCCCGCTCGTCGACA
AAGACTTTCAGCAAAGAATCGCCAAGCTGATCAAAACATACAACAAAACAGGCGAGCTGCCAAAAAACGAGTAA

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(27-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0K6M9I2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

99.685

100

0.997