Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   N6G78_RS05655 Genome accession   NZ_CP104855
Coordinates   1086573..1087151 (+) Length   192 a.a.
NCBI ID   WP_015483050.1    Uniprot ID   -
Organism   Bacillus subtilis strain TY-1     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1081573..1092151
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N6G78_RS20780 - 1082084..1082599 (-) 516 WP_396121704.1 methyl-accepting chemotaxis protein -
  N6G78_RS20785 - 1082840..1083466 (-) 627 Protein_1045 protoglobin domain-containing protein -
  N6G78_RS05640 (N6G78_05640) comW 1083521..1085050 (-) 1530 WP_015483048.1 FAD-dependent oxidoreductase -
  N6G78_RS05645 (N6G78_05645) yhxC 1085162..1086019 (+) 858 WP_015483049.1 SDR family oxidoreductase -
  N6G78_RS05650 (N6G78_05650) yhzC 1086047..1086280 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  N6G78_RS05655 (N6G78_05655) comK 1086573..1087151 (+) 579 WP_015483050.1 competence transcription factor ComK Regulator
  N6G78_RS05660 (N6G78_05660) yhxD 1087198..1088097 (-) 900 WP_015483051.1 SDR family oxidoreductase -
  N6G78_RS05665 (N6G78_05665) yhjA 1088315..1088584 (+) 270 WP_015483052.1 excalibur calcium-binding domain-containing protein -
  N6G78_RS05670 (N6G78_05670) yhjB 1088628..1090097 (-) 1470 WP_015383277.1 sodium:solute symporter family protein -
  N6G78_RS05675 (N6G78_05675) yhjC 1090094..1090294 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  N6G78_RS05680 (N6G78_05680) - 1090493..1090864 (-) 372 WP_015383278.1 hypothetical protein -
  N6G78_RS05685 (N6G78_05685) yhjE 1091016..1091639 (+) 624 WP_010886465.1 TVP38/TMEM64 family protein -
  N6G78_RS05690 (N6G78_05690) lepB 1091641..1092147 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22388.59 Da        Isoelectric Point: 7.2635

>NTDB_id=732682 N6G78_RS05655 WP_015483050.1 1086573..1087151(+) (comK) [Bacillus subtilis strain TY-1]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSRIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
SVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=732682 N6G78_RS05655 WP_015483050.1 1086573..1087151(+) (comK) [Bacillus subtilis strain TY-1]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAGAATTATTGAAAAAGATTGCGTGTTTTATGTCAACATGAAGCCGCTGCAAATTGTTGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCA
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCGAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
AGCGTTCCGAAAAGACAGGAATTTATGCTGTACCCGAAAGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAACGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

98.958

100

0.99