Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   P5628_RS08320 Genome accession   NZ_CP120577
Coordinates   1569477..1570502 (+) Length   341 a.a.
NCBI ID   WP_003245451.1    Uniprot ID   O34470
Organism   Bacillus subtilis strain PRO53     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1564477..1575502
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5628_RS08285 (P5628_08285) ylbE 1564777..1565016 (+) 240 WP_003232231.1 YlbE-like family protein -
  P5628_RS08290 (P5628_08290) ylbF 1565132..1565581 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  P5628_RS08295 (P5628_08295) ylbG 1565636..1565908 (+) 273 WP_015715839.1 YlbG family protein -
  P5628_RS08300 (P5628_08300) rsmD 1566231..1566785 (+) 555 WP_021479346.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  P5628_RS08305 (P5628_08305) coaD 1566790..1567275 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  P5628_RS08310 (P5628_08310) spoVV 1567286..1568512 (-) 1227 WP_014479716.1 dipicolinic acid transporter SpoVV -
  P5628_RS08315 (P5628_08315) ylbK 1568693..1569475 (+) 783 WP_064671351.1 patatin family protein -
  P5628_RS08320 (P5628_08320) sepM 1569477..1570502 (+) 1026 WP_003245451.1 protease DdcP Regulator
  P5628_RS08325 (P5628_08325) ylbM 1570519..1571766 (-) 1248 WP_277709577.1 nucleotidyltransferase -
  P5628_RS08330 (P5628_08330) - 1571763..1571948 (-) 186 WP_103803451.1 hypothetical protein -
  P5628_RS08335 (P5628_08335) ylbN 1571976..1572494 (+) 519 WP_014479718.1 DUF177 domain-containing protein -
  P5628_RS08340 (P5628_08340) rpmF 1572516..1572695 (+) 180 WP_003154457.1 50S ribosomal protein L32 -
  P5628_RS08345 (P5628_08345) gerR 1572841..1573422 (+) 582 WP_103803452.1 sporulation specific transcriptional regulator GerR -
  P5628_RS08350 (P5628_08350) ylbP 1573479..1573961 (-) 483 WP_014476736.1 N-acetyltransferase -
  P5628_RS08355 (P5628_08355) - 1574121..1575017 (+) 897 WP_003232206.1 2-dehydropantoate 2-reductase -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37651.23 Da        Isoelectric Point: 6.5347

>NTDB_id=732677 P5628_RS08320 WP_003245451.1 1569477..1570502(+) (sepM) [Bacillus subtilis strain PRO53]
MLRKKHFSWMLVILILIAVLSFIKLPYYITKPGEATELASLIKVEGGYPEKGSLSLMTVKVGPANPFTYVWAKMHPYYEI
VPDESIKEEGESDKEYMKRQLQMMKSSQENAVIAAYQKAGKKVSYSFNGIYASSVVENMPAKGKIEVGDKIISADGKNYQ
SAEKLIDYISSKKAGDKVTLKIEREEKEKRVTLTLKQFPDEPDRAGIGVSLYTDRNVKVEPDIDFEIENIGGPSAGLMMS
LEIYNQLTKPDETKGYDIAGTGTIDVDGKVGPIGGIDQKVVAADKAGKDIFFAPNQNGASNSDYKNAVKTAKDIDSNMKI
VPVDTMQDAIDYLNKLKAKST

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=732677 P5628_RS08320 WP_003245451.1 1569477..1570502(+) (sepM) [Bacillus subtilis strain PRO53]
TTGCTACGTAAAAAACATTTTAGCTGGATGCTCGTCATCCTCATACTGATCGCCGTTTTATCATTTATAAAACTTCCATA
CTATATTACAAAACCGGGAGAAGCGACAGAGCTTGCTTCATTGATAAAAGTGGAGGGAGGCTACCCGGAAAAAGGAAGCC
TGTCCTTAATGACTGTTAAAGTGGGACCGGCTAATCCGTTTACATATGTGTGGGCAAAGATGCACCCTTATTATGAAATT
GTTCCTGATGAGAGCATTAAGGAGGAAGGCGAGTCAGATAAGGAGTATATGAAAAGACAGCTCCAAATGATGAAAAGCTC
GCAAGAAAATGCGGTTATAGCCGCCTATCAAAAGGCAGGAAAAAAAGTCAGCTATTCCTTTAACGGCATATACGCAAGCT
CTGTTGTAGAAAACATGCCGGCAAAAGGGAAAATAGAAGTCGGTGATAAAATCATCAGCGCAGACGGCAAAAACTATCAG
TCTGCTGAAAAGCTAATTGATTATATCAGCAGCAAAAAAGCGGGAGATAAAGTCACGTTAAAGATCGAAAGAGAAGAAAA
AGAAAAGCGTGTCACCCTTACGTTAAAACAATTTCCTGATGAGCCGGATCGGGCAGGAATCGGAGTTTCGCTTTATACAG
ACAGAAACGTGAAGGTAGAGCCTGATATTGATTTTGAAATTGAAAATATTGGCGGCCCGTCAGCAGGGTTAATGATGTCT
CTTGAAATCTATAATCAGCTGACAAAACCAGACGAAACAAAAGGCTACGATATTGCGGGAACAGGTACCATTGATGTTGA
TGGGAAAGTAGGCCCGATCGGCGGCATTGATCAAAAAGTCGTCGCCGCAGACAAAGCCGGAAAAGACATTTTCTTCGCGC
CAAATCAAAACGGCGCCAGCAATTCCGATTATAAGAACGCAGTAAAAACAGCAAAAGATATTGATTCAAATATGAAGATT
GTGCCTGTTGATACCATGCAGGATGCGATTGATTATTTGAATAAGCTGAAAGCGAAAAGCACCTGA

Domains

Predicted by InterProScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(232-331)

Peptidase family M50 (Peptidase_M50)

(59-220)

PDZ domain (PDZ_2)

(128-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2KJP

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

39.143

100

0.402