Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   P5628_RS08290 Genome accession   NZ_CP120577
Coordinates   1565132..1565581 (+) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis strain PRO53     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1560132..1570581
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5628_RS08250 (P5628_08250) ctaE 1560149..1560772 (+) 624 WP_003232244.1 cytochrome c oxidase subunit III -
  P5628_RS08255 (P5628_08255) ctaF 1560775..1561107 (+) 333 WP_003232242.1 cytochrome c oxidase subunit IVB -
  P5628_RS08260 (P5628_08260) ctaG 1561135..1562028 (+) 894 WP_015715837.1 cytochrome c oxidase assembly factor CtaG -
  P5628_RS08265 (P5628_08265) ylbA 1562060..1562422 (-) 363 WP_003232238.1 YugN family protein -
  P5628_RS08270 (P5628_08270) ylbB 1562562..1563008 (+) 447 WP_003221362.1 CBS domain-containing protein -
  P5628_RS08275 (P5628_08275) ylbC 1563092..1564132 (+) 1041 WP_032725641.1 CAP domain-containing protein -
  P5628_RS08280 (P5628_08280) ylbD 1564363..1564761 (+) 399 WP_277709576.1 YlbD family protein -
  P5628_RS08285 (P5628_08285) ylbE 1564777..1565016 (+) 240 WP_003232231.1 YlbE-like family protein -
  P5628_RS08290 (P5628_08290) ylbF 1565132..1565581 (+) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  P5628_RS08295 (P5628_08295) ylbG 1565636..1565908 (+) 273 WP_015715839.1 YlbG family protein -
  P5628_RS08300 (P5628_08300) rsmD 1566231..1566785 (+) 555 WP_021479346.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  P5628_RS08305 (P5628_08305) coaD 1566790..1567275 (+) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  P5628_RS08310 (P5628_08310) spoVV 1567286..1568512 (-) 1227 WP_014479716.1 dipicolinic acid transporter SpoVV -
  P5628_RS08315 (P5628_08315) ylbK 1568693..1569475 (+) 783 WP_064671351.1 patatin family protein -
  P5628_RS08320 (P5628_08320) sepM 1569477..1570502 (+) 1026 WP_003245451.1 protease DdcP Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=732676 P5628_RS08290 WP_003221370.1 1565132..1565581(+) (ylbF) [Bacillus subtilis strain PRO53]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=732676 P5628_RS08290 WP_003221370.1 1565132..1565581(+) (ylbF) [Bacillus subtilis strain PRO53]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGACAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCCATTCTTGATGAGGT
CAGCGTTGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGCTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1