Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   N6G78_RS02120 Genome accession   NZ_CP104855
Coordinates   419983..421131 (+) Length   382 a.a.
NCBI ID   WP_014475800.1    Uniprot ID   A0A0D1KXJ1
Organism   Bacillus subtilis strain TY-1     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 414983..426131
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N6G78_RS02100 (N6G78_02100) yclH 415359..416039 (-) 681 WP_015382762.1 ABC transporter ATP-binding protein -
  N6G78_RS02105 (N6G78_02105) yclI 416055..417515 (-) 1461 WP_015382763.1 ABC transporter permease -
  N6G78_RS02110 (N6G78_02110) yclJ 417728..418411 (+) 684 WP_015482792.1 two-component system response regulator YclJ -
  N6G78_RS02115 (N6G78_02115) yclK 418398..419819 (+) 1422 WP_080030630.1 two-component system sensor histidine kinase YclK -
  N6G78_RS02120 (N6G78_02120) rapC 419983..421131 (+) 1149 WP_014475800.1 response regulator aspartate phosphatase RapC Regulator
  N6G78_RS02125 (N6G78_02125) phrC 421115..421237 (+) 123 WP_003224994.1 phosphatase RapC inhibitor PhrC Regulator
  N6G78_RS02130 (N6G78_02130) yczM 421337..421426 (-) 90 WP_015482794.1 YjcZ family sporulation protein -
  N6G78_RS02135 (N6G78_02135) yczN 421508..421621 (-) 114 WP_014478831.1 YjcZ family sporulation protein -
  N6G78_RS02140 (N6G78_02140) thrD 421774..423138 (-) 1365 WP_015382767.1 aspartate kinase -
  N6G78_RS02145 (N6G78_02145) ceuB 423523..424473 (+) 951 WP_015382768.1 petrobactin ABC transporter permease YclN Machinery gene
  N6G78_RS02150 (N6G78_02150) yclO 424466..425413 (+) 948 WP_014475805.1 petrobactin ABC transporter permease YclO -

Sequence

Protein


Download         Length: 382 a.a.        Molecular weight: 45649.65 Da        Isoelectric Point: 4.9618

>NTDB_id=732673 N6G78_RS02120 WP_014475800.1 419983..421131(+) (rapC) [Bacillus subtilis strain TY-1]
MKSGVIPSSAVGQKINEWYRYIRTFSVPDAEVLKAEIQQELKHMQHDSNLLLYYSLMEFRHQLMLDYLEPLEKLNIEDQP
SLSELSRNIDSNQADLKGLLDYYVNFFRGMYEFDKREFISAITYYKQAEKKLSFVADHIERAEFYFKIAEAYYYMKQTYF
SLINIKNAYEIYVEQETYNVRIIQCHFVFGVNLMDERNFEQAARHFKLALNMAQAEQKAQLVGRAYYNLGLCYYNQDLLD
PAIDYFEKAVSTFESSRIVNSLPQAYFLITLIYYKQGKHDKASEYHKRGYEYAKETDDADYAVKFEFLQSLYQDQPNEEG
IERCFQYLKNKNMYADIEDLALEVAKYYYEQKWFKLSASYFLQVEEARKQIQRSEGLYEIEI

Nucleotide


Download         Length: 1149 bp        

>NTDB_id=732673 N6G78_RS02120 WP_014475800.1 419983..421131(+) (rapC) [Bacillus subtilis strain TY-1]
ATGAAGAGCGGGGTAATTCCTTCTTCAGCGGTCGGTCAAAAAATTAACGAGTGGTACAGATATATCCGGACATTCAGCGT
GCCGGATGCCGAAGTGTTAAAAGCTGAAATCCAGCAGGAACTGAAACACATGCAGCATGATTCCAACTTGCTGCTTTATT
ATTCACTAATGGAATTCCGGCACCAGCTTATGCTGGATTATCTTGAGCCGTTAGAGAAATTAAATATCGAAGACCAGCCA
AGCCTGTCTGAATTATCAAGAAACATTGACAGCAACCAGGCAGATCTCAAAGGGCTGCTCGACTATTACGTGAATTTTTT
TCGCGGGATGTATGAGTTTGATAAGCGGGAATTTATTTCTGCCATTACATACTATAAACAGGCGGAGAAAAAGCTCTCCT
TTGTCGCAGACCATATTGAACGGGCTGAATTCTATTTTAAAATCGCGGAAGCTTATTATTATATGAAGCAAACGTATTTT
TCATTGATTAATATAAAAAACGCTTATGAAATTTACGTGGAGCAGGAAACCTATAATGTGAGAATCATTCAATGCCATTT
CGTGTTCGGGGTCAACCTGATGGATGAAAGAAATTTCGAACAAGCCGCACGCCATTTCAAATTGGCGCTCAATATGGCCC
AAGCGGAACAAAAAGCCCAGCTGGTCGGAAGAGCATACTACAATCTCGGATTATGCTATTACAATCAAGACCTTCTAGAC
CCTGCCATTGATTACTTTGAAAAAGCGGTCTCCACGTTTGAAAGCAGCAGGATCGTCAATTCTCTCCCGCAAGCCTATTT
TTTAATCACCCTGATTTATTATAAACAGGGAAAACATGATAAAGCTTCGGAATATCACAAGCGGGGCTATGAATATGCTA
AAGAAACAGACGATGCAGACTATGCCGTAAAATTCGAGTTTTTGCAATCCCTATATCAGGATCAGCCCAATGAAGAAGGA
ATCGAACGATGTTTCCAATACTTAAAAAATAAAAATATGTACGCTGATATAGAGGATTTAGCCCTAGAAGTAGCAAAATA
CTACTATGAACAGAAATGGTTTAAACTGTCTGCTTCCTATTTTCTACAAGTTGAAGAGGCAAGAAAACAAATACAAAGGA
GTGAAGGTTTGTATGAAATTGAAATCTAA

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_12)

(223-294)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D1KXJ1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

99.738

100

0.997
  rapF Bacillus subtilis subsp. subtilis str. 168

57.105

99.476

0.568