Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   P5628_RS06100 Genome accession   NZ_CP120577
Coordinates   1181500..1183359 (+) Length   619 a.a.
NCBI ID   WP_252360566.1    Uniprot ID   -
Organism   Bacillus subtilis strain PRO53     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1176500..1188359
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5628_RS06065 (P5628_06065) yjbC 1177198..1177776 (+) 579 WP_003224597.1 GNAT family N-acetyltransferase -
  P5628_RS06070 (P5628_06070) spx 1177957..1178352 (+) 396 WP_014476435.1 transcriptional regulator Spx -
  P5628_RS06075 (P5628_06075) yjbE 1178398..1179054 (-) 657 WP_003232944.1 TerC family protein -
  P5628_RS06080 (P5628_06080) - 1179224..1179364 (+) 141 WP_119122854.1 hypothetical protein -
  P5628_RS06085 (P5628_06085) mecA 1179331..1179987 (+) 657 WP_003239278.1 adaptor protein MecA Regulator
  P5628_RS06090 (P5628_06090) - 1179982..1180104 (-) 123 WP_021479547.1 hypothetical protein -
  P5628_RS06095 (P5628_06095) coiA 1180148..1181299 (+) 1152 WP_043857280.1 competence protein CoiA Machinery gene
  P5628_RS06100 (P5628_06100) pepF 1181500..1183359 (+) 1860 WP_252360566.1 oligoendopeptidase F Regulator
  P5628_RS06105 (P5628_06105) - 1183397..1183564 (-) 168 WP_003244944.1 hypothetical protein -
  P5628_RS06110 (P5628_06110) spxH 1183879..1184778 (-) 900 WP_003245184.1 protease adaptor protein SpxH -
  P5628_RS06115 (P5628_06115) yjbI 1184775..1185173 (-) 399 WP_003232928.1 group 2 truncated hemoglobin YjbI -
  P5628_RS06120 (P5628_06120) cwlQ 1185428..1186162 (-) 735 WP_277715524.1 bifunctional muramidase/murein lytic transglycosylase -
  P5628_RS06125 (P5628_06125) yjbK 1186177..1186749 (-) 573 WP_085186275.1 CYTH domain-containing protein -
  P5628_RS06130 (P5628_06130) - 1186874..1187242 (+) 369 WP_003232922.1 hypothetical protein -
  P5628_RS06135 (P5628_06135) yjbM 1187271..1187906 (+) 636 WP_003245294.1 GTP diphosphokinase -

Sequence

Protein


Download         Length: 619 a.a.        Molecular weight: 71349.47 Da        Isoelectric Point: 5.7705

>NTDB_id=732666 P5628_RS06100 WP_252360566.1 1181500..1183359(+) (pepF) [Bacillus subtilis strain PRO53]
MNQRRRGGSPWLRKKKANQLPDRSEVKAEDTWRLEDIFPSDEAWNKEFQAVKELIPNLSKYKGKLADSADHLYEALTYQD
KVMERLGRLYTYAHMRSDQDTGNSFYQGLNDKAGNLYTQAASATAYLVPEILSIEEDKLQQFILEKEELKLYSHAIEEIT
KERPHVLSEKEEALLAEASEVLGSSSNTFSVLNNADITFPSIKDEDGNEKQITHGNFINFLESENREVRKNAFDAVYKTY
GQYKNTMATTLSGTVKKDNFYARVKKYKSAREAALSNNSIPEEVYDNLVKTINKHLPLLHRYIALRKKVLELDEVHIYDL
YTPLVKDAGMKVTYEEAKDYMLKGLAPLGEEYASILKEGLENRWVDVYENKGKRNGAYSSGAYGTNPYILMNWHNNVNNL
FTLVHEFGHSVHSYYTRKHQPYPYGNYSIFVAEVASTTNEALLGEYLLNNLEDEKQRLYILNHMLEGFRGTVFRQTMFAE
FEHLIHTKAQEGEPLTPELLTNVYYDLNKKYFGDGMVIDKEIGLEWSRIPHFYYNYYVYQYATGYSAAQALSSQILKEGK
PAVDRYIDFLKAGSSQYPIDVLKKAGVDMTSPEPIEAACKMFEEKLDEMEELLMKVKQS

Nucleotide


Download         Length: 1860 bp        

>NTDB_id=732666 P5628_RS06100 WP_252360566.1 1181500..1183359(+) (pepF) [Bacillus subtilis strain PRO53]
TTGAATCAAAGAAGACGAGGGGGATCACCATGGCTGAGGAAAAAAAAAGCAAACCAACTGCCTGACAGAAGTGAGGTAAA
GGCAGAAGACACATGGAGACTTGAGGATATTTTTCCTAGTGATGAGGCCTGGAATAAAGAATTTCAAGCTGTAAAAGAAT
TAATTCCGAATTTATCTAAGTATAAAGGAAAGCTGGCAGATTCAGCTGATCATTTATACGAGGCTCTTACGTATCAAGAT
AAAGTGATGGAGCGGCTGGGTAGGCTGTACACATATGCGCATATGCGCTCAGACCAGGATACTGGGAACTCCTTTTACCA
GGGGCTGAATGACAAGGCGGGAAACCTGTATACACAGGCCGCAAGCGCGACAGCTTATTTGGTTCCGGAGATTTTATCCA
TAGAAGAAGACAAACTGCAGCAGTTCATTCTTGAAAAAGAAGAATTAAAGCTGTACTCTCATGCGATTGAGGAGATTACA
AAGGAACGTCCGCATGTGCTGAGCGAGAAGGAAGAGGCGCTGCTTGCTGAAGCTTCCGAGGTACTGGGGTCATCTTCAAA
TACATTCAGCGTGTTAAATAACGCAGATATCACGTTCCCGTCCATTAAAGACGAAGATGGGAATGAAAAACAGATCACTC
ACGGCAATTTTATTAATTTCTTGGAAAGTGAAAACCGTGAAGTCCGCAAAAATGCGTTTGACGCAGTGTATAAAACGTAC
GGACAATATAAAAACACAATGGCCACGACGCTAAGCGGCACTGTGAAAAAGGACAACTTCTACGCGAGAGTGAAAAAGTA
CAAGTCCGCGCGTGAGGCTGCGCTTTCTAACAACAGTATTCCTGAGGAAGTATACGATAACCTTGTTAAGACGATTAATA
AGCATTTGCCGCTCCTGCACCGCTATATTGCGCTCAGAAAGAAAGTGCTTGAGCTTGATGAAGTGCATATCTATGACCTG
TATACACCGCTTGTGAAAGATGCTGGGATGAAGGTGACATACGAGGAAGCCAAAGATTACATGCTGAAAGGCCTCGCACC
TTTAGGGGAAGAATATGCCTCTATCCTAAAAGAAGGACTGGAAAACCGCTGGGTGGACGTTTACGAAAATAAAGGCAAAC
GCAATGGGGCTTATTCATCAGGAGCTTACGGCACGAATCCGTATATTTTGATGAACTGGCATAATAACGTCAATAATCTC
TTTACGCTTGTGCACGAGTTTGGACATTCCGTACACAGCTACTATACGAGAAAGCACCAGCCTTATCCATACGGCAATTA
CAGCATCTTTGTCGCGGAAGTTGCCTCTACGACAAATGAAGCGCTCCTTGGCGAATATTTGCTGAACAATTTAGAGGATG
AAAAACAGCGCTTATATATTCTCAACCATATGCTTGAGGGCTTCAGGGGAACGGTTTTCAGACAAACGATGTTCGCTGAA
TTTGAACATCTGATCCATACAAAGGCGCAAGAAGGCGAGCCGCTTACACCTGAGCTTCTGACAAATGTCTATTACGACCT
GAATAAAAAGTATTTTGGAGACGGCATGGTGATTGATAAGGAAATCGGCCTTGAATGGTCGCGTATTCCGCACTTCTATT
ACAATTACTATGTGTATCAGTATGCGACAGGGTACAGCGCTGCCCAAGCATTAAGCAGCCAGATTTTGAAGGAAGGAAAG
CCGGCGGTTGACCGTTATATTGACTTCCTGAAAGCGGGAAGCTCACAATACCCGATTGATGTCCTGAAAAAAGCGGGTGT
TGATATGACGTCTCCAGAGCCAATCGAAGCCGCGTGCAAAATGTTTGAAGAAAAACTTGATGAAATGGAAGAGCTGCTGA
TGAAAGTCAAGCAGTCTTAA

Domains

Predicted by InterProScan.

Oligopeptidase F (Peptidase_M3_N)

(130-199)

Peptidase family M3 (Peptidase_M3)

(221-600)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

48.822

95.961

0.469