Detailed information NTG0732630

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: N7277_RS01825
• Genome accession: NZ_CP104850
• Coordinates: 418330..419679 (+)
• Length: 449 a.a.
• NCBI ID: WP_274780071.1
• Uniprot ID: -
• Organism: Cloacibacterium sp. TD35
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 413330..424679

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
N7277_RS01820 (N7277_01820)	-	415988..418225 (+)	2238	WP_274780070.1	T9SS type A sorting domain-containing protein	-
N7277_RS01825 (N7277_01825)	radA	418330..419679 (+)	1350	WP_274780071.1	DNA repair protein RadA	Machinery gene
N7277_RS01830 (N7277_01830)	-	419805..420425 (+)	621	WP_274780072.1	ACP phosphodiesterase	-
N7277_RS01835 (N7277_01835)	-	420382..420882 (-)	501	WP_274780073.1	DUF6702 family protein	-
N7277_RS01840 (N7277_01840)	-	420947..421522 (+)	576	WP_274780074.1	HupE/UreJ family protein	-
N7277_RS01845 (N7277_01845)	-	421636..424020 (+)	2385	WP_274780075.1	M1 family metallopeptidase	-
N7277_RS01850 (N7277_01850)	-	424206..424484 (+)	279	WP_274780076.1	co-chaperone GroES	-

Sequence

Protein

• Length: 449 a.a.
• Molecular weight: 49820.82 Da
• Isoelectric Point: 7.0017

>NTDB_id=732630 N7277_RS01825 WP_274780071.1 418330..419679(+) (radA) [Cloacibacterium sp. TD35]
MAKIKTAYYCQKCGTQYPQWHGQCKNCGEWNTLVEEIVEKKSSHYDILGSGKQKIINITEVETGTEIRLKTVSEELNRVL
GGGIVLGSVILIGGEPGIGKSTLLLQLALKMKKKILYVSGEESASQIKMRADRITDIQNPNCFLYTETSIEKILMEAKNL
QPDLMIVDSIQTLQSQLLESAAGTVSQIRECSGELIKFAKEKNIPVILVGHITKDGQIAGPKVLEHMVDVVLNFDGDRNH
LFRLLRAQKNRFGSTQEIGIYEMVTQGLKEIKNPSEILITKKFEELSGNAVAVTIEGNRPMLLEIQALVSTAVYGTPQRS
CTGFDSKRLNMLLAVLEKRAGFMLGAKDVFLNITGGIKTDDPALDLAVIAAVLSSNDDLSISEKYCFAGEIGLSGEIRPI
PQIEQRISEAEKLGYEKIFVSNLNKIPKRKFGIRIEEVSKIEEFHEKLF

Nucleotide

• Length: 1350 bp

>NTDB_id=732630 N7277_RS01825 WP_274780071.1 418330..419679(+) (radA) [Cloacibacterium sp. TD35]
GTGGCAAAAATAAAAACTGCATACTATTGTCAGAAATGTGGAACGCAATATCCGCAATGGCACGGACAATGCAAAAACTG
TGGAGAATGGAATACCCTAGTAGAAGAAATCGTAGAAAAAAAATCTTCTCATTATGACATTCTAGGAAGCGGGAAACAAA
AAATCATTAACATTACCGAAGTAGAAACAGGAACAGAAATTCGTCTGAAAACCGTTTCAGAGGAACTAAACCGTGTTTTA
GGAGGCGGAATTGTTCTAGGCTCTGTTATCCTCATCGGTGGCGAACCTGGAATTGGTAAATCTACGCTCCTACTCCAGCT
TGCCTTGAAAATGAAGAAGAAAATTCTGTATGTTTCTGGTGAAGAAAGTGCTTCGCAAATTAAAATGCGTGCCGACAGAA
TTACTGACATTCAAAACCCAAACTGTTTCCTCTATACCGAAACTTCTATCGAAAAAATCTTGATGGAAGCCAAAAATCTA
CAGCCAGATTTGATGATTGTAGACTCTATTCAAACTCTACAATCACAATTGCTCGAAAGTGCTGCAGGAACCGTTTCACA
GATTAGAGAATGTTCTGGAGAATTGATAAAATTTGCCAAAGAAAAAAACATTCCTGTTATTTTGGTTGGTCACATTACCA
AAGACGGACAAATTGCCGGGCCAAAAGTTTTGGAACACATGGTAGATGTAGTTCTTAATTTTGACGGAGACAGAAATCAC
CTTTTTAGATTGCTAAGAGCTCAGAAAAACCGTTTTGGCTCTACTCAAGAAATAGGTATTTATGAAATGGTGACTCAAGG
TTTAAAAGAAATTAAAAATCCATCGGAAATCTTAATCACCAAAAAATTTGAAGAACTTTCTGGGAATGCAGTTGCCGTCA
CTATAGAAGGAAACAGACCCATGCTTTTAGAAATTCAGGCTTTGGTTTCTACTGCCGTTTACGGAACTCCGCAACGCAGT
TGTACTGGTTTTGATAGCAAAAGACTGAACATGCTTCTTGCTGTTTTAGAAAAACGTGCTGGTTTTATGTTGGGCGCAAA
AGACGTCTTCCTCAATATTACCGGTGGAATAAAAACTGATGATCCAGCCCTTGACTTGGCGGTAATTGCAGCAGTATTAA
GCAGTAACGATGATTTATCCATTTCAGAAAAATATTGTTTTGCTGGTGAAATAGGTTTGAGTGGAGAAATTAGACCCATT
CCTCAAATTGAACAAAGAATTTCTGAAGCAGAAAAACTAGGCTACGAAAAGATTTTTGTATCAAATCTCAACAAAATTCC
TAAAAGAAAATTCGGAATTAGAATAGAAGAAGTAAGTAAAATAGAAGAGTTCCACGAAAAACTTTTTTAA

Domains

Predicted by InterproScan.

• AAA domain (AAA_25) (67-217)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

• Subunit ChlI of Mg-chelatase (ChlI) (338-423)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Streptococcus pneumoniae D39	48.026	100	0.488
radA	Streptococcus pneumoniae Rx1	48.026	100	0.488
radA	Streptococcus pneumoniae R6	48.026	100	0.488
radA	Streptococcus pneumoniae TIGR4	48.026	100	0.488
radA	Streptococcus mitis NCTC 12261	48.018	100	0.486
radA	Bacillus subtilis subsp. subtilis str. 168	48.009	100	0.483
radA	Streptococcus mitis SK321	47.797	100	0.483