Detailed information    

insolico Bioinformatically predicted

Overview

Name   subA/fin   Type   Machinery gene
Locus tag   P5628_RS00180 Genome accession   NZ_CP120577
Coordinates   29937..30167 (+) Length   76 a.a.
NCBI ID   WP_003243417.1    Uniprot ID   A0ABU0VCT2
Organism   Bacillus subtilis strain PRO53     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 24937..35167
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5628_RS00150 (P5628_00150) ridA 25100..25477 (+) 378 WP_003226738.1 2-iminobutanoate/2-iminopropanoate deaminase -
  P5628_RS00155 (P5628_00155) spoVG 25672..25965 (+) 294 WP_003218346.1 septation regulator SpoVG -
  P5628_RS00160 (P5628_00160) glmU 26158..27528 (+) 1371 WP_032725231.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  P5628_RS00165 (P5628_00165) prs 27551..28505 (+) 955 Protein_27 ribose-phosphate diphosphokinase -
  P5628_RS00170 (P5628_00170) ctc 28590..29204 (+) 615 WP_003243443.1 50S ribosomal protein L25/general stress protein Ctc -
  P5628_RS00175 (P5628_00175) pth 29311..29877 (+) 567 WP_003226727.1 aminoacyl-tRNA hydrolase -
  P5628_RS00180 (P5628_00180) subA/fin 29937..30167 (+) 231 WP_003243417.1 anti-sigma-F factor Fin Machinery gene
  P5628_RS00185 (P5628_00185) mfd 30237..33770 (+) 3534 WP_120027700.1 transcription-repair coupling factor -
  P5628_RS00190 (P5628_00190) spoVT 33906..34442 (+) 537 WP_003218365.1 stage V sporulation protein T -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8847.81 Da        Isoelectric Point: 5.3895

>NTDB_id=732620 P5628_RS00180 WP_003243417.1 29937..30167(+) (subA/fin) [Bacillus subtilis strain PRO53]
MALHYYCRHCGVKVGSLESSMVSTDSLGFQHLTNEERNDMISYKENGDVHVLTICEDCQEALDRNPHYHEYHTFIQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=732620 P5628_RS00180 WP_003243417.1 29937..30167(+) (subA/fin) [Bacillus subtilis strain PRO53]
ATGGCTTTGCATTATTATTGTCGTCATTGCGGAGTGAAAGTAGGCAGTCTCGAATCTTCAATGGTATCGACAGACTCACT
TGGATTTCAGCACTTAACAAATGAGGAAAGAAACGATATGATTTCTTATAAAGAAAATGGAGATGTCCATGTTTTGACGA
TATGTGAAGATTGCCAAGAGGCGCTTGACCGAAATCCGCATTACCACGAATACCACACATTTATTCAATAA

Domains

Predicted by InterProScan.

Anti-sigma-F factor Fin (Fin)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  subA/fin Bacillus subtilis subsp. subtilis str. 168

100

100

1