Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   N7219_RS10040 Genome accession   NZ_CP104846
Coordinates   2041895..2042524 (+) Length   209 a.a.
NCBI ID   WP_000839151.1    Uniprot ID   A0A066SWI0
Organism   Escherichia coli strain DFS.1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2036895..2047524
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N7219_RS10020 (N7219_10020) ycbZ 2037286..2039046 (-) 1761 WP_000156502.1 Lon protease family protein -
  N7219_RS10025 (N7219_10025) matP 2039232..2039684 (+) 453 WP_000877153.1 macrodomain Ter protein MatP -
  N7219_RS10030 (N7219_10030) ompA 2039760..2040812 (-) 1053 WP_001346420.1 porin OmpA -
  N7219_RS10035 (N7219_10035) sulA 2041167..2041676 (-) 510 WP_000288707.1 SOS-induced cell division inhibitor SulA -
  N7219_RS10040 (N7219_10040) sxy/tfoX 2041895..2042524 (+) 630 WP_000839151.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  N7219_RS10045 (N7219_10045) yccS 2042487..2044649 (-) 2163 WP_000875041.1 YccS family putative transporter -
  N7219_RS10050 (N7219_10050) yccF 2044659..2045105 (-) 447 WP_001261235.1 YccF domain-containing protein -
  N7219_RS10055 (N7219_10055) helD 2045228..2047282 (+) 2055 WP_001295938.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24163.08 Da        Isoelectric Point: 9.0428

>NTDB_id=732587 N7219_RS10040 WP_000839151.1 2041895..2042524(+) (sxy/tfoX) [Escherichia coli strain DFS.1]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
CLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=732587 N7219_RS10040 WP_000839151.1 2041895..2042524(+) (sxy/tfoX) [Escherichia coli strain DFS.1]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGAGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
TGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCAGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A066SWI0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995