Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   N7217_RS15300 Genome accession   NZ_CP104843
Coordinates   3145926..3146555 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain DFL.5     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3140926..3151555
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N7217_RS15285 (N7217_15285) helD 3141168..3143222 (-) 2055 WP_260673380.1 DNA helicase IV -
  N7217_RS15290 (N7217_15290) yccF 3143345..3143791 (+) 447 WP_001261235.1 YccF domain-containing protein -
  N7217_RS15295 (N7217_15295) yccS 3143801..3145963 (+) 2163 WP_072258314.1 YccS family putative transporter -
  N7217_RS15300 (N7217_15300) sxy/tfoX 3145926..3146555 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  N7217_RS15305 (N7217_15305) sulA 3146774..3147283 (+) 510 WP_000288704.1 SOS-induced cell division inhibitor SulA -
  N7217_RS15310 (N7217_15310) ompA 3147640..3148680 (+) 1041 WP_022645481.1 porin OmpA -
  N7217_RS15315 (N7217_15315) matP 3148757..3149209 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  N7217_RS15320 (N7217_15320) ycbZ 3149395..3151155 (+) 1761 WP_000156473.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=732573 N7217_RS15300 WP_000839153.1 3145926..3146555(-) (sxy/tfoX) [Escherichia coli strain DFL.5]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=732573 N7217_RS15300 WP_000839153.1 3145926..3146555(-) (sxy/tfoX) [Escherichia coli strain DFL.5]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTTTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTAGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1