Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   N4T34_RS26565 Genome accession   NZ_CP104835
Coordinates   5714188..5715234 (-) Length   348 a.a.
NCBI ID   WP_065423292.1    Uniprot ID   -
Organism   Achromobacter xylosoxidans strain 2021CK-01139     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5709188..5720234
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N4T34_RS26560 (N4T34_26585) - 5712396..5714054 (+) 1659 WP_054481811.1 CYTH and CHAD domain-containing protein -
  N4T34_RS26565 (N4T34_26590) pilA 5714188..5715234 (-) 1047 WP_065423292.1 signal recognition particle-docking protein FtsY Machinery gene
  N4T34_RS26570 (N4T34_26595) rsmD 5715605..5716171 (+) 567 WP_006385943.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  N4T34_RS26575 (N4T34_26600) coaD 5716230..5716733 (+) 504 WP_006385942.1 pantetheine-phosphate adenylyltransferase -
  N4T34_RS26580 (N4T34_26605) - 5716912..5717163 (+) 252 WP_006385941.1 YfhL family 4Fe-4S dicluster ferredoxin -
  N4T34_RS26585 (N4T34_26610) - 5717160..5718380 (+) 1221 WP_049055629.1 benzoate/H(+) symporter BenE family transporter -
  N4T34_RS26590 (N4T34_26615) - 5718445..5718831 (-) 387 WP_054481810.1 MOSC N-terminal beta barrel domain-containing protein -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 36219.76 Da        Isoelectric Point: 8.5379

>NTDB_id=732537 N4T34_RS26565 WP_065423292.1 5714188..5715234(-) (pilA) [Achromobacter xylosoxidans strain 2021CK-01139]
MPQQPVAPAPAVSQPAATPSAPVVAPAPAAIVPAPAAPEPEAAPKKASWLSRLKQGLSRTGQSIGGIFVGVKVDENLFEE
LESALIMADAGLEATEKLLTALRARVKKERIEDPAKVKAALRQLLADHLRPLERAFDLKRAQPLVVMIAGVNGAGKTTSI
GKLAHTFQRQGASVLLAAGDTFRAAAREQLIEWGSRNNVTVISQDGGDPAAVAFDSVNAGRARGMGVVMVDTAGRLPTQL
HLMEELKKIRRVIGKADPAAPHEVLLVVDGNTGQNALAQIRAFDAAINLTGLVVTKLDGTAKGGTLAAVAAGSQGVRPIP
VYWIGVGESLEDLQPFVADEFAGALLAD

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=732537 N4T34_RS26565 WP_065423292.1 5714188..5715234(-) (pilA) [Achromobacter xylosoxidans strain 2021CK-01139]
GTGCCGCAGCAGCCAGTGGCTCCCGCGCCGGCGGTTTCGCAGCCCGCCGCAACGCCGTCGGCGCCGGTCGTCGCCCCGGC
TCCCGCCGCCATTGTGCCGGCCCCTGCCGCGCCCGAACCGGAAGCCGCGCCCAAGAAGGCGTCCTGGCTGTCGCGGCTCA
AGCAGGGCCTGTCGCGCACCGGCCAGAGCATTGGCGGCATCTTCGTCGGCGTCAAGGTCGACGAGAACCTGTTCGAGGAA
CTCGAATCGGCGCTCATTATGGCCGATGCCGGCCTGGAAGCCACCGAGAAGCTGCTGACCGCGCTGCGCGCGCGGGTCAA
GAAAGAACGCATCGAGGACCCGGCCAAGGTCAAGGCCGCGCTGCGCCAGCTGCTGGCCGACCACCTGCGTCCGCTGGAGC
GCGCCTTCGACCTGAAGCGCGCGCAGCCGCTGGTGGTGATGATCGCGGGCGTCAACGGCGCGGGCAAGACCACGTCGATC
GGCAAGCTGGCGCACACCTTCCAGCGCCAGGGCGCCAGCGTGCTGCTGGCCGCGGGCGACACGTTCCGCGCCGCCGCGCG
CGAGCAACTGATCGAATGGGGCAGCCGCAACAACGTCACCGTGATCTCGCAGGATGGCGGCGACCCGGCGGCGGTGGCGT
TCGACTCGGTCAACGCCGGCCGCGCGCGCGGCATGGGCGTGGTGATGGTGGACACGGCCGGCCGCCTGCCGACCCAGCTG
CACCTGATGGAAGAACTGAAGAAGATCCGCCGCGTCATCGGCAAGGCCGACCCGGCCGCGCCGCACGAGGTGCTGCTGGT
GGTGGACGGCAACACCGGCCAGAACGCGTTGGCGCAGATCCGCGCGTTCGACGCGGCCATCAACCTGACGGGCCTGGTCG
TGACCAAGCTGGACGGCACCGCCAAGGGCGGCACGCTGGCGGCGGTGGCGGCGGGCAGCCAGGGCGTGCGGCCGATCCCG
GTGTACTGGATCGGCGTGGGCGAAAGCCTGGAAGACCTGCAGCCGTTCGTGGCCGACGAATTCGCCGGAGCCTTGCTGGC
CGACTGA

Domains

Predicted by InterproScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(62-123)

SRP54-type protein, GTPase domain (SRP54)

(144-346)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

53.846

100

0.543