Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   P5707_RS19115 Genome accession   NZ_CP120567
Coordinates   3926047..3926652 (-) Length   201 a.a.
NCBI ID   WP_001195024.1    Uniprot ID   -
Organism   Escherichia coli strain A0 34/86     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3921047..3931652
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5707_RS19095 (P5707_19095) aes 3921201..3922169 (+) 969 WP_021520568.1 acetyl esterase -
  P5707_RS19100 (P5707_19100) hemH 3922144..3923106 (-) 963 WP_021520567.1 ferrochelatase -
  P5707_RS19105 (P5707_19105) adk 3923238..3923882 (-) 645 WP_001220233.1 adenylate kinase -
  P5707_RS19110 (P5707_19110) htpG 3924063..3925937 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  P5707_RS19115 (P5707_19115) recR 3926047..3926652 (-) 606 WP_001195024.1 recombination mediator RecR Machinery gene
  P5707_RS19120 (P5707_19120) ybaB 3926652..3926981 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  P5707_RS19125 (P5707_19125) dnaX 3927034..3928965 (-) 1932 WP_021520566.1 DNA polymerase III subunit gamma/tau -
  P5707_RS19130 (P5707_19130) apt 3929094..3929645 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  P5707_RS19135 (P5707_19135) ybaN 3929798..3930175 (-) 378 WP_001188900.1 DUF454 family protein -
  P5707_RS19140 (P5707_19140) priC 3930245..3930772 (+) 528 WP_000844854.1 primosomal replication protein N'' -
  P5707_RS19145 (P5707_19145) rsmS 3930786..3930947 (+) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  P5707_RS19150 (P5707_19150) - 3931000..3931098 (-) 99 Protein_3745 hypothetical protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.04 Da        Isoelectric Point: 5.0822

>NTDB_id=732516 P5707_RS19115 WP_001195024.1 3926047..3926652(-) (recR) [Escherichia coli strain A0 34/86]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRKEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=732516 P5707_RS19115 WP_001195024.1 3926047..3926652(-) (recR) [Escherichia coli strain A0 34/86]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGCCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTAAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGGCACCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGTGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443