Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   FLY91_RS10380 Genome accession   NZ_AP024560
Coordinates   2157712..2158227 (+) Length   171 a.a.
NCBI ID   WP_001130207.1    Uniprot ID   -
Organism   Escherichia coli strain NIPH17_0020     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2152712..2163227
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FLY91_RS10335 csrA 2153299..2153484 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  FLY91_RS10365 yqaB 2154942..2155508 (+) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  FLY91_RS10370 yqaA 2155505..2155933 (+) 429 WP_001287457.1 YqaA family protein -
  FLY91_RS10375 gshA 2156006..2157562 (+) 1557 WP_000611802.1 glutamate--cysteine ligase -
  FLY91_RS10380 luxS 2157712..2158227 (+) 516 WP_001130207.1 S-ribosylhomocysteine lyase Regulator
  FLY91_RS10385 emrB 2158291..2159829 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  FLY91_RS10390 emrA 2159846..2161018 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  FLY91_RS10395 emrR 2161145..2161675 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  FLY91_RS10400 ygaH 2161766..2162101 (-) 336 WP_000119750.1 L-valine transporter subunit YgaH -
  FLY91_RS10405 ygaZ 2162091..2162828 (-) 738 WP_000445658.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19430.26 Da        Isoelectric Point: 5.2597

>NTDB_id=73248 FLY91_RS10380 WP_001130207.1 2157712..2158227(+) (luxS) [Escherichia coli strain NIPH17_0020]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGKGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=73248 FLY91_RS10380 WP_001130207.1 2157712..2158227(+) (luxS) [Escherichia coli strain NIPH17_0020]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAAGGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAATGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment