Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   P5708_RS03940 Genome accession   NZ_CP120563
Coordinates   810495..811691 (-) Length   398 a.a.
NCBI ID   WP_061157982.1    Uniprot ID   -
Organism   Escherichia coli strain H22     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 805495..816691
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5708_RS03920 (P5708_03920) - 805547..806803 (+) 1257 WP_001525622.1 GDSL-type esterase/lipase family protein -
  P5708_RS03925 (P5708_03925) neuC 806800..807975 (+) 1176 WP_032144273.1 UDP-N-acetylglucosamine 2-epimerase -
  P5708_RS03930 (P5708_03930) - 807968..809116 (+) 1149 WP_001527662.1 DUF6716 putative glycosyltransferase -
  P5708_RS03935 (P5708_03935) - 809106..810335 (+) 1230 WP_000575410.1 alpha-2,8-polysialyltransferase family protein -
  P5708_RS03940 (P5708_03940) kpsS 810495..811691 (-) 1197 WP_061157982.1 capsular biosynthesis protein Regulator
  P5708_RS03945 (P5708_03945) - 811726..813753 (-) 2028 WP_277699752.1 capsular polysaccharide biosynthesis protein -
  P5708_RS03950 (P5708_03950) kdsB 813750..814490 (-) 741 WP_061157980.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  P5708_RS03955 (P5708_03955) - 814500..816176 (-) 1677 WP_001298258.1 polysaccharide biosynthesis/export family protein -

Sequence

Protein


Download         Length: 398 a.a.        Molecular weight: 47277.55 Da        Isoelectric Point: 10.1173

>NTDB_id=732384 P5708_RS03940 WP_061157982.1 810495..811691(-) (kpsS) [Escherichia coli strain H22]
MQGNALTVLLSGKKYLLLQGPMGPFFSDVAEWLESLGRNAVNVAFNGGDRFYCRHRQYLAYYQTPKEFPGWLRDLHRQYD
FDTILCFGDCRPLHKEAKRWAKSKGIRFLAFEEGYLRPQFITVEEGGVNAYSSLPRDPDFYRKLPDMPAPHVENLKPSTM
KRIGHAMWYYLMGWHYRHEFPRYRHHKSFSPWYEARCWVRAYWRKQLYKVTQRKVLPRLMNELDQRYYLAVLQVYNDSQI
RNHSNYNDVRDYINEVMYSFSRKAPKESYLVIKHHPMDRGHRLYRPLIKRLSKEYDLGERVIYVHDLPMPELLRHAKAVV
TINSTAGISALIHNKPLKVMGNALYDIKGLTYQGHLHQFWQADFKPDIKLFKKFRGYLLVKTQVNAVYYGGNTKKTPT

Nucleotide


Download         Length: 1197 bp        

>NTDB_id=732384 P5708_RS03940 WP_061157982.1 810495..811691(-) (kpsS) [Escherichia coli strain H22]
ATGCAAGGTAATGCACTAACCGTTTTATTATCCGGTAAAAAATATCTGCTATTGCAGGGGCCGATGGGACCCTTTTTCAG
TGATGTTGCCGAGTGGCTAGAGTCATTAGGCCGTAACGCTGTGAATGTTGCCTTCAACGGTGGGGATCGTTTTTACTGCC
GCCATCGACAATACCTGGCTTACTACCAAACGCCGAAAGAGTTTCCCGGATGGTTACGGGATCTCCACCGACAATATGAC
TTTGATACCATCCTCTGCTTTGGTGACTGCCGCCCATTGCACAAAGAAGCAAAACGTTGGGCAAAGTCGAAAGGGATCCG
CTTTCTGGCATTTGAAGAAGGATATTTACGTCCGCAGTTTATTACTGTTGAAGAAGGCGGAGTGAACGCATATTCATCGC
TACCGCGCGATCCGGATTTTTATCGTAAGTTACCAGATATGCCTGCGCCGCACGTTGAGAACTTAAAACCTTCAACGATG
AAACGTATAGGTCATGCGATGTGGTATTACCTGATGGGTTGGCATTACCGTCATGAGTTCCCTCGCTACCGCCACCACAA
ATCGTTTTCCCCCTGGTATGAGGCTCGTTGCTGGGTTCGTGCATACTGGCGCAAGCAACTTTACAAGGTAACACAGCGTA
AGGTATTGCCGAGGTTAATGAATGAGCTGGATCAGCGTTATTATCTTGCCGTTTTGCAGGTGTATAACGATAGCCAGATT
CGTAACCACAGCAATTATAACGATGTGCGTGACTATATTAATGAAGTCATGTACTCATTTTCACGTAAAGCACCGAAAGA
AAGTTATTTGGTGATCAAGCACCATCCAATGGATCGTGGTCACAGACTCTATCGACCATTAATTAAGCGGTTGAGTAAGG
AATATGACTTAGGTGAGCGAGTCATATACGTGCACGATCTCCCGATGCCGGAATTATTACGCCACGCAAAAGCGGTGGTG
ACAATTAACAGTACGGCGGGGATCTCTGCGCTGATTCATAACAAACCACTCAAAGTGATGGGCAATGCCCTGTACGACAT
CAAAGGATTGACGTATCAAGGGCATTTGCACCAGTTCTGGCAGGCCGATTTTAAACCAGATATAAAACTGTTTAAGAAGT
TTCGCGGGTATTTATTGGTTAAGACGCAGGTTAATGCGGTTTATTATGGGGGGAACACAAAAAAAACGCCAACATAA

Domains

Predicted by InterProScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(83-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

39.846

97.739

0.389