Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   P5709_RS22750 Genome accession   NZ_CP120557
Coordinates   4677701..4678306 (+) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain B771     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4672701..4683306
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5709_RS22720 (P5709_22720) rsmS 4673406..4673567 (-) 162 WP_000051153.1 pleiotropic regulatory protein RsmS -
  P5709_RS22725 (P5709_22725) priC 4673581..4674108 (-) 528 WP_000844874.1 primosomal replication protein N'' -
  P5709_RS22730 (P5709_22730) ybaN 4674178..4674555 (+) 378 WP_001188905.1 DUF454 family protein -
  P5709_RS22735 (P5709_22735) apt 4674708..4675259 (+) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  P5709_RS22740 (P5709_22740) dnaX 4675388..4677319 (+) 1932 WP_000122013.1 DNA polymerase III subunit gamma/tau -
  P5709_RS22745 (P5709_22745) ybaB 4677372..4677701 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  P5709_RS22750 (P5709_22750) recR 4677701..4678306 (+) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  P5709_RS22755 (P5709_22755) htpG 4678416..4680290 (+) 1875 WP_000678201.1 molecular chaperone HtpG -
  P5709_RS22760 (P5709_22760) adk 4680471..4681115 (+) 645 WP_001220233.1 adenylate kinase -
  P5709_RS22765 (P5709_22765) hemH 4681351..4682313 (+) 963 WP_001250117.1 ferrochelatase -
  P5709_RS22770 (P5709_22770) aes 4682310..4683269 (-) 960 WP_000801849.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=732362 P5709_RS22750 WP_001195025.1 4677701..4678306(+) (recR) [Escherichia coli strain B771]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=732362 P5709_RS22750 WP_001195025.1 4677701..4678306(+) (recR) [Escherichia coli strain B771]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443