Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   N6H17_RS05540 Genome accession   NZ_CP104788
Coordinates   1131132..1131761 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain SHP24     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1126132..1136761
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N6H17_RS05520 (N6H17_05525) ycbZ 1126533..1128293 (-) 1761 WP_000156518.1 Lon protease family protein -
  N6H17_RS05525 (N6H17_05530) matP 1128479..1128931 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  N6H17_RS05530 (N6H17_05535) ompA 1129007..1130047 (-) 1041 WP_024201506.1 porin OmpA -
  N6H17_RS05535 (N6H17_05540) sulA 1130404..1130913 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  N6H17_RS05540 (N6H17_05545) sxy/tfoX 1131132..1131761 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  N6H17_RS05545 (N6H17_05550) yccS 1131724..1133886 (-) 2163 WP_000875061.1 YccS family putative transporter -
  N6H17_RS05550 (N6H17_05555) yccF 1133896..1134342 (-) 447 WP_001261235.1 YccF domain-containing protein -
  N6H17_RS05555 (N6H17_05560) helD 1134465..1136519 (+) 2055 WP_083583103.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=732349 N6H17_RS05540 WP_000839153.1 1131132..1131761(+) (sxy/tfoX) [Escherichia coli strain SHP24]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=732349 N6H17_RS05540 WP_000839153.1 1131132..1131761(+) (sxy/tfoX) [Escherichia coli strain SHP24]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1