Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   N7E56_RS16375 Genome accession   NZ_CP104786
Coordinates   3407775..3408101 (-) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   N9J3X5
Organism   Acinetobacter baumannii strain Ab-3556     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3402775..3413101
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N7E56_RS16355 - 3402876..3403505 (-) 630 WP_000219967.1 FHA domain-containing protein -
  N7E56_RS16360 gspD 3403546..3405822 (-) 2277 WP_001196426.1 type II secretion system secretin GspD -
  N7E56_RS16365 - 3405864..3406700 (-) 837 WP_000870033.1 type II secretion system protein N -
  N7E56_RS16370 gspN 3406700..3407443 (-) 744 WP_000730343.1 type II secretion system protein N -
  N7E56_RS16375 hns 3407775..3408101 (-) 327 WP_000801427.1 H-NS family nucleoid-associated regulatory protein Regulator
  N7E56_RS16380 - 3408296..3408736 (-) 441 WP_000661569.1 thioesterase family protein -
  N7E56_RS16385 - 3408744..3409937 (-) 1194 WP_000681773.1 hypothetical protein -
  N7E56_RS16390 - 3409947..3410786 (-) 840 WP_001230196.1 hypothetical protein -
  N7E56_RS16395 - 3410795..3411562 (-) 768 WP_000897412.1 uroporphyrinogen-III synthase -
  N7E56_RS16400 hemC 3411567..3412484 (-) 918 WP_031956197.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=732339 N7E56_RS16375 WP_000801427.1 3407775..3408101(-) (hns) [Acinetobacter baumannii strain Ab-3556]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=732339 N7E56_RS16375 WP_000801427.1 3407775..3408101(-) (hns) [Acinetobacter baumannii strain Ab-3556]
ATGAAACCGGATATTAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGCAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAGATTGCTGAAAATGTAGGTTTTAGTGTTGAACAACTTC
TAGAATTTGGCGCTCAAAAACGTAAGAAAACAACACGTAAATCTGTAGAACCACGTTACCGTAACAAAAACAATGCTGAA
GAGACTTGGACGGGTCGCGGTAAACAACCACGTTGGTTAGTTGCTGAAATTGAAAAAGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9J3X5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1