Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   P5709_RS01330 Genome accession   NZ_CP120557
Coordinates   255658..256287 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   Q32HU7
Organism   Escherichia coli strain B771     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 250658..261287
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P5709_RS01310 (P5709_01310) ycbZ 251059..252819 (-) 1761 WP_000156531.1 Lon protease family protein -
  P5709_RS01315 (P5709_01315) matP 253005..253457 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  P5709_RS01320 (P5709_01320) ompA 253533..254573 (-) 1041 WP_000750416.1 porin OmpA -
  P5709_RS01325 (P5709_01325) sulA 254930..255439 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  P5709_RS01330 (P5709_01330) sxy/tfoX 255658..256287 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  P5709_RS01335 (P5709_01335) yccS 256250..258412 (-) 2163 WP_000875061.1 YccS family putative transporter -
  P5709_RS01340 (P5709_01340) yccF 258422..258868 (-) 447 WP_001261235.1 YccF domain-containing protein -
  P5709_RS01345 (P5709_01345) helD 258991..261045 (+) 2055 WP_001295354.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=732284 P5709_RS01330 WP_000839153.1 255658..256287(+) (sxy/tfoX) [Escherichia coli strain B771]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=732284 P5709_RS01330 WP_000839153.1 255658..256287(+) (sxy/tfoX) [Escherichia coli strain B771]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q32HU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1