Detailed information    

insolico Bioinformatically predicted

Overview

Name   recQ   Type   Machinery gene
Locus tag   P3T66_RS09690 Genome accession   NZ_CP120512
Coordinates   1899695..1901443 (-) Length   582 a.a.
NCBI ID   WP_011375527.1    Uniprot ID   Q38UI2
Organism   Latilactobacillus sakei strain PMC104     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1894695..1906443
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3T66_RS09670 (P3T66_09670) - 1895803..1897272 (+) 1470 WP_035146856.1 ABC transporter permease -
  P3T66_RS09675 (P3T66_09675) - 1897288..1897950 (+) 663 WP_035146852.1 ABC transporter ATP-binding protein -
  P3T66_RS09680 (P3T66_09680) - 1898044..1898532 (+) 489 WP_052039264.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  P3T66_RS09685 (P3T66_09685) - 1898580..1899233 (-) 654 WP_094365860.1 MIP/aquaporin family protein -
  P3T66_RS09690 (P3T66_09690) recQ 1899695..1901443 (-) 1749 WP_011375527.1 DNA helicase RecQ Machinery gene
  P3T66_RS09695 (P3T66_09695) - 1901555..1902115 (-) 561 WP_016265782.1 TMEM175 family protein -
  P3T66_RS09700 (P3T66_09700) - 1902227..1903000 (+) 774 WP_035146847.1 hypothetical protein -
  P3T66_RS09705 (P3T66_09705) - 1903014..1903496 (-) 483 WP_035146844.1 DUF3955 domain-containing protein -
  P3T66_RS09710 (P3T66_09710) - 1903816..1904130 (+) 315 WP_025016165.1 SemiSWEET family transporter -
  P3T66_RS09715 (P3T66_09715) - 1904524..1904802 (+) 279 Protein_1854 DUF1093 domain-containing protein -
  P3T66_RS09720 (P3T66_09720) - 1904845..1905483 (-) 639 WP_231953260.1 DNA alkylation repair protein -
  P3T66_RS09725 (P3T66_09725) - 1905496..1906107 (-) 612 WP_035146839.1 histidine phosphatase family protein -

Sequence

Protein


Download         Length: 582 a.a.        Molecular weight: 65752.38 Da        Isoelectric Point: 5.1646

>NTDB_id=732191 P3T66_RS09690 WP_011375527.1 1899695..1901443(-) (recQ) [Latilactobacillus sakei strain PMC104]
MQAQAVLKEKFGYDHFREGQADVIESLLAGTNVLAIMPTGGGKSLCYQIPALMLPGLTLVVSPLISLMKDQVDALNENGI
PATFINSTLTQGEVQERFNQAARGEVKLLYVSPERLDSDYFLADLAELTIDLIAVDEAHCISQWGHDFRPSYLRLTDTIK
SMRQQPTIVALTATATSQVADDIMLRLGIQHEVKTGFSRENLAFQVVKNQNSDRYLIDYLKVNKQKSGIIYASTRKEVER
LTKLIEKAKLAVTMYHGGLNEMVRRQNQEDFLYDRKPIMVATNAFGMGIDKSNVRFVVHAQIPGSLEAYYQEAGRAGRDG
LPSEAILLFKVNDVQIQHFFIDQSEMDDENKQREYAKLQEMTQYANTQQCLQQYIVNYFDDDCEKCGRCSNCLDTRESQD
ITIDVQKVLSCIKRMDERFGKVMVAQVLTGSKNQKIMQFRFDELPTYGLMRGDSQKEVSGLIDYLVASGYLRASGGQYPV
LQITLAGVKVLKGQEKVSRKMAAKVQKTLPEDNELFERLRELRRDLAEEQGVPPFVIFSDKTLYSMCEIMPTSLTEMLDV
KGVGENKLEKYGELFLDILVAE

Nucleotide


Download         Length: 1749 bp        

>NTDB_id=732191 P3T66_RS09690 WP_011375527.1 1899695..1901443(-) (recQ) [Latilactobacillus sakei strain PMC104]
ATGCAGGCACAAGCAGTACTAAAAGAAAAATTTGGCTATGATCATTTTAGAGAAGGCCAAGCAGATGTGATTGAATCCTT
GCTAGCAGGGACCAATGTATTGGCGATTATGCCGACTGGTGGCGGGAAGTCGTTATGTTACCAGATTCCAGCGCTGATGT
TACCGGGGTTAACGCTAGTCGTTTCACCATTGATTTCGCTGATGAAAGATCAAGTCGACGCGCTCAACGAAAATGGGATT
CCGGCAACGTTTATCAATAGTACCTTGACGCAAGGTGAGGTGCAGGAGCGCTTCAATCAGGCCGCACGTGGTGAAGTCAA
ATTGCTTTATGTGTCGCCAGAACGGTTGGATTCTGATTACTTTTTAGCGGATTTAGCCGAATTAACGATTGATTTGATTG
CCGTCGATGAAGCGCATTGTATCTCGCAATGGGGGCACGATTTTCGGCCCAGTTATCTACGCTTAACGGATACAATTAAA
AGCATGCGACAACAACCAACAATTGTCGCACTAACGGCGACTGCTACGTCACAAGTAGCTGATGATATTATGTTGCGCTT
AGGGATTCAACATGAAGTTAAGACTGGTTTTTCACGGGAAAACCTTGCTTTTCAAGTGGTTAAAAACCAAAACAGTGATC
GCTACTTAATCGATTATTTAAAGGTTAATAAGCAAAAATCCGGCATCATCTATGCTAGTACACGTAAAGAAGTTGAACGG
CTCACGAAGCTGATTGAAAAAGCGAAACTGGCAGTCACAATGTATCATGGTGGTTTAAATGAAATGGTGCGCCGGCAAAA
TCAAGAGGATTTTCTCTACGATCGTAAACCGATTATGGTCGCCACGAATGCTTTTGGGATGGGGATTGATAAGAGTAATG
TGCGATTTGTCGTGCATGCCCAAATTCCCGGCAGCTTAGAAGCTTATTATCAAGAAGCAGGTCGGGCCGGACGTGATGGC
TTACCGAGTGAGGCCATCTTACTTTTTAAAGTCAATGATGTCCAAATCCAACATTTTTTCATCGATCAATCAGAGATGGA
CGATGAAAATAAGCAACGGGAATACGCTAAGTTACAAGAAATGACACAATACGCCAACACGCAACAGTGCTTGCAACAAT
ATATCGTCAATTATTTTGATGATGACTGTGAAAAATGTGGCCGTTGTAGCAATTGTCTCGATACACGCGAATCACAAGAC
ATTACAATTGATGTTCAAAAGGTTTTATCGTGCATCAAGCGAATGGATGAACGTTTCGGCAAAGTAATGGTTGCGCAAGT
CTTGACGGGCTCTAAGAATCAGAAGATTATGCAGTTCCGCTTTGATGAATTGCCAACATACGGTTTGATGCGGGGCGATT
CACAAAAAGAAGTCAGTGGTTTGATTGATTATTTAGTCGCATCAGGCTATTTACGGGCTTCTGGTGGTCAATATCCCGTT
TTACAGATCACGTTGGCGGGCGTCAAAGTACTTAAGGGTCAAGAAAAAGTGTCGCGTAAAATGGCTGCTAAGGTTCAAAA
AACATTGCCTGAAGACAATGAGTTATTCGAACGCTTACGCGAATTACGCCGTGATTTAGCTGAAGAACAGGGTGTACCGC
CGTTTGTAATCTTCTCAGACAAGACGTTGTATTCAATGTGTGAAATTATGCCAACCTCACTGACTGAAATGTTAGATGTT
AAAGGTGTCGGGGAGAATAAATTAGAAAAATATGGTGAATTATTCTTGGATATTTTAGTTGCTGAGTAA

Domains

Predicted by InterProScan.

HRDC domain (HRDC)

(513-579)

RecQ zinc-binding (RecQ_Zn_bind)

(332-393)

DEAD/DEAH box helicase (DEAD)

(19-180)

Helicase conserved C-terminal domain (Helicase_C)

(214-319)

RQC domain (RQC)

(396-506)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q38UI2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recQ Bacillus subtilis subsp. subtilis str. 168

52.332

99.485

0.521