Detailed information    

insolico Bioinformatically predicted

Overview

Name   recS   Type   Machinery gene
Locus tag   P3T66_RS05210 Genome accession   NZ_CP120512
Coordinates   1029169..1030614 (-) Length   481 a.a.
NCBI ID   WP_277576024.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain PMC104     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1024169..1035614
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P3T66_RS05185 (P3T66_05185) - 1024341..1024616 (-) 276 WP_011374717.1 HU family DNA-binding protein -
  P3T66_RS05190 (P3T66_05190) der 1024823..1026133 (-) 1311 WP_016265173.1 ribosome biogenesis GTPase Der -
  P3T66_RS05195 (P3T66_05195) rpsA 1026367..1027578 (-) 1212 WP_016265174.1 30S ribosomal protein S1 -
  P3T66_RS05200 (P3T66_05200) cmk 1027673..1028332 (-) 660 WP_016265175.1 (d)CMP kinase -
  P3T66_RS05205 (P3T66_05205) - 1028399..1029100 (-) 702 WP_277576023.1 LysM peptidoglycan-binding domain-containing protein -
  P3T66_RS05210 (P3T66_05210) recS 1029169..1030614 (-) 1446 WP_277576024.1 RecQ family ATP-dependent DNA helicase Machinery gene
  P3T66_RS05215 (P3T66_05215) - 1030611..1031639 (-) 1029 WP_277576025.1 helix-turn-helix domain-containing protein -
  P3T66_RS05220 (P3T66_05220) - 1031676..1031906 (+) 231 WP_016265179.1 ferredoxin -
  P3T66_RS05225 (P3T66_05225) - 1031984..1032559 (-) 576 WP_056946643.1 ECF transporter S component -
  P3T66_RS05230 (P3T66_05230) - 1032874..1033644 (-) 771 WP_011374726.1 pseudouridine synthase -
  P3T66_RS05235 (P3T66_05235) scpB 1033647..1034270 (-) 624 WP_011374727.1 SMC-Scp complex subunit ScpB -
  P3T66_RS05240 (P3T66_05240) - 1034254..1035009 (-) 756 WP_056946646.1 segregation and condensation protein A -
  P3T66_RS05245 (P3T66_05245) - 1035018..1035386 (-) 369 WP_011374729.1 hypothetical protein -

Sequence

Protein


Download         Length: 481 a.a.        Molecular weight: 54369.11 Da        Isoelectric Point: 5.2742

>NTDB_id=732154 P3T66_RS05210 WP_277576024.1 1029169..1030614(-) (recS) [Latilactobacillus sakei strain PMC104]
MTSEQLIYDQLAQHFGYSTFKPGQLAVIQSVLAGQETLAVLPTGTGKSLCYQLPAYILGHTTVIVSPLIALMQDQVAQLN
YQGEKRAVAINSNLVPQQKYQLLTHLADYRFIFMAPETISQPEVIQALQRCQIDLFVVDEAHCISQWGIDFRPDYLVLAA
IKAQLQPTATLALTATANDRVRQDILNKLALKNAAQIMTSVDRPNIYLGVSQQPDEQAKNQFLANLVKKSQGPGIVYFSS
RQKTMAIATFLQQETDLKIAYYHAALSTQERYLIQQQFMQGQLDLICTTNAFGMGINKADIRFVIHYHLPQNIESYLQEI
GRAGRDGQAAYALVLTTPQDLYLQQSLVSFGIPEPGLIRRYYQEPQLFKQSQGSEFELLRRYQQLGMTEEEVTALLDNRQ
TEKQFSLQTMLDYLTLKGCRRQFIVNYFDQAPKTIEHSETCCGEQDSTDFLAQLDLEQAINYKTAETVVLTGWTGILDQL
F

Nucleotide


Download         Length: 1446 bp        

>NTDB_id=732154 P3T66_RS05210 WP_277576024.1 1029169..1030614(-) (recS) [Latilactobacillus sakei strain PMC104]
ATGACTTCTGAACAACTCATTTATGACCAGTTAGCGCAGCACTTTGGCTATTCAACCTTTAAACCGGGCCAGTTAGCGGT
TATTCAGTCGGTACTTGCTGGGCAGGAGACATTAGCCGTTTTACCAACTGGGACTGGGAAGTCGCTGTGTTATCAATTAC
CGGCCTATATCTTGGGGCATACGACTGTGATTGTCTCGCCACTAATCGCATTAATGCAAGATCAGGTCGCCCAATTGAAT
TACCAAGGGGAAAAGCGAGCTGTCGCCATTAATTCTAATTTAGTGCCTCAGCAAAAATACCAGTTGTTGACGCATTTAGC
GGACTACCGCTTTATTTTTATGGCACCGGAGACTATCAGTCAACCGGAAGTGATTCAAGCGCTCCAACGTTGTCAAATCG
ATTTGTTTGTGGTTGATGAGGCCCATTGTATTTCACAGTGGGGAATTGACTTTAGACCGGACTATTTAGTTTTAGCAGCC
ATTAAGGCCCAATTACAGCCAACTGCAACACTGGCTTTGACGGCGACTGCCAATGATCGTGTACGCCAAGATATTTTGAA
TAAGTTGGCGTTAAAAAACGCGGCCCAAATCATGACCTCTGTTGATCGCCCCAATATCTATTTGGGCGTGAGCCAACAAC
CTGATGAACAAGCGAAGAACCAATTTTTAGCCAACTTAGTGAAAAAAAGCCAGGGTCCCGGGATTGTTTATTTTTCAAGT
CGGCAAAAGACAATGGCGATTGCAACCTTTTTACAACAGGAGACTGATCTAAAAATTGCTTATTACCACGCAGCGTTATC
AACCCAGGAGCGGTATTTAATTCAACAACAATTTATGCAAGGACAACTCGATTTAATTTGTACCACCAATGCTTTTGGGA
TGGGGATTAACAAAGCGGATATTCGCTTTGTGATTCATTATCACTTGCCACAAAATATCGAAAGTTATCTACAAGAAATT
GGACGAGCAGGTCGAGATGGGCAAGCAGCGTATGCTTTAGTCCTAACAACCCCGCAAGATTTATATTTACAACAATCACT
CGTATCATTTGGGATTCCGGAACCCGGACTCATTCGGCGCTATTATCAGGAACCGCAATTATTTAAACAAAGTCAAGGCA
GTGAATTTGAACTGTTGCGTCGTTACCAACAACTGGGGATGACCGAAGAAGAGGTGACTGCCTTATTGGATAATCGCCAA
ACTGAAAAACAATTTTCATTACAAACAATGTTGGATTATTTGACGCTCAAGGGCTGCCGGCGTCAATTTATTGTGAACTA
TTTTGACCAGGCACCAAAGACGATTGAACACAGCGAAACGTGTTGCGGGGAACAGGATTCGACCGACTTTTTAGCACAAT
TAGACTTAGAACAGGCTATTAATTATAAAACCGCTGAAACCGTTGTTCTGACTGGTTGGACGGGAATCTTGGACCAATTA
TTTTAG

Domains

Predicted by InterProScan.

DEAD/DEAH box helicase (DEAD)

(22-181)

Helicase conserved C-terminal domain (Helicase_C)

(219-326)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recS Bacillus subtilis subsp. subtilis str. 168

41.372

93.971

0.389