Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   N7K38_RS11345 Genome accession   NZ_CP104762
Coordinates   2234889..2236559 (-) Length   556 a.a.
NCBI ID   WP_010745910.1    Uniprot ID   -
Organism   Enterococcus raffinosus strain ATCC 49464     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2229889..2241559
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N7K38_RS11315 (N7K38_11315) - 2230005..2232194 (-) 2190 WP_010745916.1 penicillin-binding transpeptidase domain-containing protein -
  N7K38_RS11320 (N7K38_11320) ftsL 2232195..2232572 (-) 378 WP_010745915.1 cell division protein FtsL -
  N7K38_RS11325 (N7K38_11325) rsmH 2232578..2233531 (-) 954 WP_010745914.1 16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH -
  N7K38_RS11330 (N7K38_11330) mraZ 2233547..2233978 (-) 432 WP_010745913.1 division/cell wall cluster transcriptional repressor MraZ -
  N7K38_RS11335 (N7K38_11335) - 2234147..2234518 (-) 372 WP_010745912.1 DUF3397 domain-containing protein -
  N7K38_RS11340 (N7K38_11340) - 2234746..2234862 (+) 117 WP_010745911.1 DUF4044 domain-containing protein -
  N7K38_RS11345 (N7K38_11345) recN 2234889..2236559 (-) 1671 WP_010745910.1 DNA repair protein RecN Machinery gene
  N7K38_RS11350 (N7K38_11350) - 2236588..2237046 (-) 459 WP_010745909.1 arginine repressor -
  N7K38_RS11355 (N7K38_11355) - 2237062..2237877 (-) 816 WP_010745908.1 TlyA family RNA methyltransferase -
  N7K38_RS11360 (N7K38_11360) - 2237922..2238806 (-) 885 WP_010745907.1 polyprenyl synthetase family protein -
  N7K38_RS11365 (N7K38_11365) - 2238806..2239027 (-) 222 WP_010745906.1 exodeoxyribonuclease VII small subunit -
  N7K38_RS11370 (N7K38_11370) xseA 2239027..2240361 (-) 1335 WP_010745905.1 exodeoxyribonuclease VII large subunit -
  N7K38_RS11375 (N7K38_11375) - 2240377..2241234 (-) 858 WP_010745904.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -

Sequence

Protein


Download         Length: 556 a.a.        Molecular weight: 62831.14 Da        Isoelectric Point: 4.5520

>NTDB_id=732118 N7K38_RS11345 WP_010745910.1 2234889..2236559(-) (recN) [Enterococcus raffinosus strain ATCC 49464]
MLQELTIKNFAIISSLHLGFTDGMTALTGETGAGKSIIIDAVSLLAGARSSIEYIRQGSDKCLVEGLFDLPKQHEFSLLM
EELGIEVDEAGLIVQRDLNISGKSVSRVNGRIVTLANLRRIGQFLVDIQGQNDHQELMHPESHLRLLDSFGDSAFQEKKN
RYQTAYHSYITLMNQVRKFKQNEQSFVQRIDMLTFQQEEIGNAELSIGEEEKLMEEREKLTNYQKIVDSLSYSYQAMTNE
ETNSLDAIGSASQELQTIASLDTDYEGISDNVHSAYYLLQDAVSEIGRQLDLLELDEERLDIVNERLELIHQLKRKYGDS
IEIILNYYDQISEELLDSDFSGDKLERLEKELYEKENELQHLAEMLQAARKKMAKKLESAIQNELKDLYMENARFEVSFK
ESSFNAEGVDEVEFYITTNPGEPLKPLVKVASGGEISRVMLALKTIFSKTQGLTSIVFDEVDTGVSGRVAQAIADKIYQI
GLNSQALCITHLPQVAAKADHQLFIRKEIVDGRTLTKVEELTERDRIDEIARMLAGAEITDLTVKHAKELLQLAKK

Nucleotide


Download         Length: 1671 bp        

>NTDB_id=732118 N7K38_RS11345 WP_010745910.1 2234889..2236559(-) (recN) [Enterococcus raffinosus strain ATCC 49464]
ATGTTGCAAGAGCTAACAATCAAAAATTTTGCGATCATTTCTTCGTTGCATTTAGGATTTACTGATGGAATGACAGCTCT
AACTGGCGAAACAGGCGCTGGAAAATCAATTATTATTGATGCAGTTAGCTTGTTAGCTGGAGCTCGTTCATCCATCGAAT
ATATTCGTCAAGGTAGTGATAAATGTTTAGTTGAGGGGCTTTTTGATTTACCTAAGCAACATGAGTTCAGTCTACTAATG
GAAGAACTTGGAATTGAAGTAGATGAGGCAGGATTGATTGTTCAAAGAGATTTGAATATCTCAGGAAAAAGTGTCTCACG
AGTGAACGGAAGAATTGTTACTTTGGCGAACTTACGAAGAATTGGTCAATTCTTAGTAGACATTCAAGGCCAAAACGACC
ACCAGGAATTGATGCATCCAGAATCGCATCTCCGTCTTTTAGATAGTTTTGGTGACTCGGCTTTTCAAGAGAAAAAAAAT
AGGTATCAGACCGCATATCATAGCTATATAACTTTAATGAATCAAGTTAGAAAATTTAAACAAAATGAACAATCTTTTGT
TCAAAGAATCGATATGCTAACTTTTCAACAAGAAGAAATTGGAAATGCAGAGCTATCTATTGGTGAAGAAGAAAAACTGA
TGGAAGAGCGGGAGAAACTTACGAACTATCAGAAAATAGTAGATAGTCTTTCTTATAGTTACCAAGCTATGACAAATGAA
GAAACAAACTCTTTAGACGCGATAGGTTCAGCTAGTCAGGAACTTCAAACAATAGCTTCTTTAGATACTGACTATGAAGG
CATATCTGATAATGTTCATAGTGCCTACTATCTTTTGCAAGATGCGGTCAGTGAAATCGGGCGTCAATTAGATTTGCTAG
AGTTAGATGAGGAGCGCTTGGATATAGTTAATGAAAGGCTTGAACTAATTCATCAACTGAAAAGAAAGTATGGAGATTCG
ATCGAGATCATTCTAAACTATTATGATCAGATTAGTGAAGAACTTTTGGATTCAGATTTCTCTGGAGACAAATTGGAAAG
ATTAGAAAAAGAACTATATGAAAAAGAAAACGAATTACAACACTTAGCTGAGATGTTACAAGCGGCGCGAAAAAAGATGG
CGAAAAAATTAGAATCAGCAATCCAAAATGAACTGAAGGATTTGTACATGGAGAATGCTCGGTTTGAAGTGAGTTTTAAA
GAGAGCTCTTTTAATGCAGAGGGAGTAGATGAGGTAGAGTTTTACATAACGACTAATCCTGGAGAGCCATTGAAGCCTCT
AGTTAAAGTGGCCTCAGGAGGAGAAATTTCTCGAGTCATGTTGGCTTTAAAGACCATTTTCTCAAAAACTCAGGGATTAA
CGAGTATTGTTTTTGATGAAGTAGATACTGGAGTGAGTGGGCGAGTCGCCCAAGCGATTGCAGACAAGATTTATCAAATT
GGTCTGAATTCACAGGCCTTATGTATCACTCATTTACCTCAAGTAGCCGCTAAAGCTGATCATCAACTATTTATTCGTAA
AGAGATAGTTGATGGAAGGACTTTAACTAAGGTAGAGGAGTTAACTGAAAGGGATCGTATTGACGAAATTGCTCGTATGT
TAGCAGGAGCAGAGATTACAGATTTAACTGTCAAGCATGCAAAAGAATTATTGCAGTTAGCAAAAAAATAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-506)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

48.596

100

0.498