Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   N7K38_RS08605 Genome accession   NZ_CP104762
Coordinates   1693609..1694652 (-) Length   347 a.a.
NCBI ID   WP_028020681.1    Uniprot ID   -
Organism   Enterococcus raffinosus strain ATCC 49464     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1688609..1699652
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N7K38_RS08590 (N7K38_08590) - 1690641..1691132 (-) 492 WP_010744907.1 ComE operon protein 2 -
  N7K38_RS08595 (N7K38_08595) - 1691501..1692526 (-) 1026 WP_245176493.1 MFS transporter -
  N7K38_RS21505 - 1692444..1692683 (-) 240 Protein_1703 MFS transporter -
  N7K38_RS08600 (N7K38_08600) - 1692844..1693503 (-) 660 WP_016250141.1 helix-hairpin-helix domain-containing protein -
  N7K38_RS08605 (N7K38_08605) sepM 1693609..1694652 (-) 1044 WP_028020681.1 SepM family pheromone-processing serine protease Regulator
  N7K38_RS08610 (N7K38_08610) coaD 1694642..1695136 (-) 495 WP_010744912.1 pantetheine-phosphate adenylyltransferase -
  N7K38_RS08615 (N7K38_08615) rsmD 1695138..1695692 (-) 555 WP_010744913.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  N7K38_RS08620 (N7K38_08620) - 1695852..1696199 (-) 348 WP_028020682.1 YlbG family protein -
  N7K38_RS08625 (N7K38_08625) - 1696186..1696611 (-) 426 WP_010744915.1 YlbF family regulator -
  N7K38_RS08630 (N7K38_08630) - 1696613..1697719 (-) 1107 WP_010744916.1 CAP-associated domain-containing protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 38204.92 Da        Isoelectric Point: 6.8884

>NTDB_id=732112 N7K38_RS08605 WP_028020681.1 1693609..1694652(-) (sepM) [Enterococcus raffinosus strain ATCC 49464]
MKNNKLVKRLLLIFLALAVVACVIVPIPYYIEEPGETINLKELITVNDKKDENKGSFSLTSVGIRRATVFTALKAKIEPF
HEIISADELTGGASDDEYMQIQKFNMETSQNFAIEQALKLANRPYKMEYKGVYVLGVEKNSNFAGKISVGDTVTKADGKT
FTSSEDFMKYVKSQKVGQKMKVTYTHDGKTKEATEKLIKLPTDKKPGIGITLTDHTEIDSQDKVKVDAGDIGGPSAGLMF
TLEIYEQLVDKDLRHGEKIAGTGTINSEGEVGRIGGIDKKVASAAADKNKVFFAPDDEITKEMKEAQPGIKSNYEEAKAA
AKKLDTDMKIVPVKTVKDALEYLESMK

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=732112 N7K38_RS08605 WP_028020681.1 1693609..1694652(-) (sepM) [Enterococcus raffinosus strain ATCC 49464]
GTGAAAAATAATAAACTCGTCAAACGATTATTACTTATATTTTTAGCATTAGCAGTGGTGGCTTGTGTGATTGTACCGAT
TCCTTATTACATCGAGGAGCCAGGAGAGACAATCAATTTAAAAGAGTTGATTACAGTCAATGATAAAAAGGATGAAAACA
AAGGATCTTTTAGTTTAACCTCAGTTGGTATACGTCGAGCAACGGTTTTTACAGCTCTAAAAGCAAAAATTGAACCTTTT
CATGAAATTATTTCTGCTGATGAACTGACTGGCGGTGCTAGTGATGACGAATATATGCAGATTCAAAAATTCAATATGGA
AACGTCTCAAAATTTTGCAATTGAACAAGCTTTAAAATTAGCTAATAGACCTTATAAAATGGAGTACAAAGGGGTCTATG
TACTAGGTGTAGAGAAAAATTCAAATTTTGCTGGAAAAATTAGTGTTGGCGATACGGTTACAAAAGCAGATGGAAAAACA
TTTACCAGCAGCGAAGATTTTATGAAGTACGTAAAATCCCAAAAAGTCGGTCAAAAAATGAAAGTGACCTATACACATGA
TGGCAAAACAAAAGAAGCTACCGAGAAGTTGATTAAATTACCAACAGATAAAAAGCCCGGGATTGGAATTACTTTAACTG
ATCACACGGAGATTGACTCGCAGGATAAAGTGAAGGTGGATGCTGGTGATATCGGTGGACCTTCTGCTGGCTTAATGTTT
ACACTGGAAATTTATGAACAGCTCGTTGACAAGGATCTGCGTCACGGTGAGAAGATCGCTGGGACTGGAACAATTAATTC
TGAAGGAGAGGTCGGAAGAATTGGCGGGATTGATAAGAAGGTCGCTAGTGCAGCGGCGGATAAAAATAAGGTCTTTTTCG
CTCCTGATGATGAGATTACAAAAGAAATGAAGGAAGCACAACCAGGTATTAAATCCAATTATGAAGAAGCCAAAGCAGCA
GCTAAAAAGCTGGATACAGATATGAAGATCGTTCCAGTGAAGACAGTGAAGGATGCTTTAGAGTATTTGGAATCAATGAA
ATAG

Domains

Predicted by InterproScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(191-311)

PDZ domain (PDZ_2)

(128-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

49.275

99.424

0.49