Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   N7K38_RS01400 Genome accession   NZ_CP104762
Coordinates   281879..283723 (+) Length   614 a.a.
NCBI ID   WP_010747151.1    Uniprot ID   -
Organism   Enterococcus raffinosus strain ATCC 49464     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 276879..288723
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N7K38_RS01385 (N7K38_01385) - 276977..278800 (+) 1824 WP_010747154.1 APC family permease -
  N7K38_RS01390 (N7K38_01390) - 279036..279482 (+) 447 WP_010747153.1 MarR family winged helix-turn-helix transcriptional regulator -
  N7K38_RS01395 (N7K38_01395) - 279482..281863 (+) 2382 WP_010747152.1 ABC transporter ATP-binding protein -
  N7K38_RS01400 (N7K38_01400) rcrQ 281879..283723 (+) 1845 WP_010747151.1 ABC transporter ATP-binding protein Regulator
  N7K38_RS01405 (N7K38_01405) - 283774..284367 (-) 594 WP_035015740.1 hypothetical protein -
  N7K38_RS01410 (N7K38_01410) - 284357..285247 (-) 891 WP_010747149.1 DUF4947 domain-containing protein -
  N7K38_RS01415 (N7K38_01415) - 285389..286051 (-) 663 WP_028020376.1 ABC transporter permease -
  N7K38_RS01420 (N7K38_01420) - 286057..286974 (-) 918 WP_010747147.1 osmoprotectant ABC transporter substrate-binding protein -
  N7K38_RS01425 (N7K38_01425) - 286978..287613 (-) 636 WP_010747146.1 ABC transporter permease -

Sequence

Protein


Download         Length: 614 a.a.        Molecular weight: 68012.55 Da        Isoelectric Point: 5.9485

>NTDB_id=732095 N7K38_RS01400 WP_010747151.1 281879..283723(+) (rcrQ) [Enterococcus raffinosus strain ATCC 49464]
MAEQKQNRPHGGGPGRGMAAPVEKAKDFKGTIKKLVSYLGAYKIAVFFVMIFAAASTIFNIWGPKILSKAITELFNGLIK
KYQGTGDINFEKIGGILLFMLALYGVASLFGIIQGWIMSTISQKITYRMRKEISEKINRMPMNYFESRTTGEVLSRITND
VDTLGQSLNQSLTQLITSTFTIVGVIVMMLSISVKMTGIAILIVPISLILILVVVKNSQKYFKTQQEYLGVINGKVEETI
GGYTIVRLFNEEENSLKEFKEQNDVLFKSAWKSQFLSGLMQPIMNFVGNLGYVGVAIAGGVMAYNGSITVGDIQAFIQYV
RNLTQPIAQLAQVSNMLQSMAAAAERVFEFLAEDEEDQMAENPVQIDKAEGMVDFEHVQFGYTPDKIVIQDFTSHVDPGQ
TVAIVGPTGAGKTTMVKLLMRFYDVNSGAIKIDGHNIKDFNRADLRKNIGMVLQDTWLFKGTIMDNLRYGRLDATDEEVY
AAAKAAHVDHFIKTLPGGYNMELNEESSNISQGQKQLLTIARAILADKPILILDEATSSVDTRTEGLIQEAMNNLMKGRT
SFVIAHRLSTIKDADKILYMQGGDIKEQGSHEELLAQNGLYAALYNSQFEELSE

Nucleotide


Download         Length: 1845 bp        

>NTDB_id=732095 N7K38_RS01400 WP_010747151.1 281879..283723(+) (rcrQ) [Enterococcus raffinosus strain ATCC 49464]
ATGGCAGAACAAAAACAAAATCGCCCTCATGGTGGCGGACCTGGCCGGGGAATGGCTGCGCCAGTAGAAAAAGCCAAAGA
CTTCAAAGGAACAATCAAAAAATTAGTTTCCTATCTTGGCGCATATAAAATCGCAGTTTTTTTTGTAATGATCTTTGCAG
CAGCCTCAACGATTTTTAATATTTGGGGGCCAAAAATCTTATCAAAGGCGATTACTGAATTATTTAATGGCTTGATTAAG
AAATATCAAGGAACTGGCGATATCAACTTTGAAAAAATCGGTGGCATCCTCCTTTTCATGTTAGCTCTTTATGGAGTTGC
TTCCTTATTCGGAATCATCCAAGGCTGGATTATGTCGACGATTTCGCAAAAAATCACATATCGGATGCGGAAAGAAATTT
CTGAAAAAATCAATCGCATGCCGATGAACTATTTTGAAAGTCGGACGACAGGGGAAGTCCTTTCACGTATCACAAATGAT
GTGGATACCTTAGGACAATCCTTGAACCAAAGCTTAACTCAATTGATTACTTCAACCTTTACGATTGTTGGAGTTATTGT
TATGATGCTTTCGATTTCAGTGAAGATGACAGGGATTGCGATCTTAATCGTACCAATTTCTTTAATACTGATCTTAGTTG
TTGTGAAAAACTCACAAAAATACTTCAAAACCCAACAGGAATACCTTGGAGTTATCAATGGGAAGGTAGAAGAAACCATC
GGTGGGTATACAATCGTTCGTTTATTCAATGAAGAAGAAAACTCATTAAAAGAATTTAAAGAGCAAAATGATGTATTGTT
CAAATCAGCTTGGAAATCACAATTTCTTTCTGGATTGATGCAGCCCATTATGAACTTTGTCGGAAACTTAGGCTATGTCG
GTGTGGCGATCGCTGGTGGGGTTATGGCATACAACGGCTCAATCACAGTCGGAGATATCCAAGCGTTTATCCAATATGTA
CGTAACCTGACACAACCAATTGCTCAGCTTGCGCAAGTATCTAACATGCTTCAATCAATGGCGGCAGCGGCTGAACGCGT
CTTTGAATTCCTAGCAGAGGATGAAGAGGATCAAATGGCTGAAAACCCAGTTCAGATTGACAAAGCAGAAGGCATGGTGG
ACTTTGAACATGTTCAATTCGGTTACACACCGGATAAGATCGTTATCCAAGACTTTACTTCTCATGTTGATCCTGGTCAG
ACAGTCGCAATTGTGGGGCCAACTGGTGCTGGTAAAACGACAATGGTTAAGTTGCTGATGCGCTTTTATGATGTAAATTC
TGGTGCAATCAAAATTGATGGTCATAACATCAAGGACTTCAATCGTGCAGATTTACGTAAAAATATCGGGATGGTTTTAC
AAGATACCTGGTTATTTAAAGGCACAATTATGGACAACCTTCGTTACGGTCGTTTAGATGCTACCGATGAAGAAGTTTAT
GCAGCGGCAAAAGCCGCTCACGTGGATCACTTCATCAAGACATTACCTGGCGGCTATAATATGGAATTAAACGAAGAGTC
TTCCAACATCTCGCAGGGGCAAAAACAATTGTTGACGATTGCTCGCGCGATTTTAGCAGATAAACCTATTCTAATTCTCG
ATGAGGCGACATCCTCTGTTGATACACGGACAGAAGGATTGATCCAAGAGGCTATGAATAACTTAATGAAGGGGCGTACC
TCTTTCGTTATTGCCCATCGTTTGTCAACAATCAAAGATGCGGATAAGATTCTCTATATGCAAGGCGGAGATATTAAGGA
ACAAGGAAGCCACGAAGAATTATTGGCTCAAAACGGGCTTTATGCCGCATTGTATAATTCGCAATTTGAAGAATTATCAG
AATAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(46-326)

ABC transporter (ABC_tran)

(391-538)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

50.943

94.951

0.484