Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   N5056_RS02425 Genome accession   NZ_CP104757
Coordinates   525497..526879 (-) Length   460 a.a.
NCBI ID   WP_012773160.1    Uniprot ID   A0AAW3SUS5
Organism   Pectobacterium aroidearum strain QJ021     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 520497..531879
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5056_RS02395 (N5056_02395) pepP 520651..521976 (-) 1326 WP_180778946.1 Xaa-Pro aminopeptidase -
  N5056_RS02400 (N5056_02400) - 522067..522654 (-) 588 WP_012773156.1 YecA family protein -
  N5056_RS02405 (N5056_02405) zapA 522847..523176 (+) 330 WP_012773157.1 cell division protein ZapA -
  N5056_RS02415 (N5056_02415) - 523474..524115 (+) 642 WP_181829743.1 5-formyltetrahydrofolate cyclo-ligase -
  N5056_RS02420 (N5056_02420) nadR 524112..525365 (-) 1254 WP_012773159.1 multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR -
  N5056_RS02425 (N5056_02425) radA 525497..526879 (-) 1383 WP_012773160.1 DNA repair protein RadA Machinery gene
  N5056_RS02430 (N5056_02430) serB 526897..527874 (-) 978 WP_012773161.1 phosphoserine phosphatase -
  N5056_RS02435 (N5056_02435) - 528031..528726 (+) 696 WP_181829742.1 YtjB family periplasmic protein -
  N5056_RS02440 (N5056_02440) - 528781..529698 (-) 918 WP_012773163.1 hypothetical protein -
  N5056_RS02445 (N5056_02445) prfC 530004..531593 (+) 1590 WP_012773164.1 peptide chain release factor 3 -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 49608.13 Da        Isoelectric Point: 7.4218

>NTDB_id=732041 N5056_RS02425 WP_012773160.1 525497..526879(-) (radA) [Pectobacterium aroidearum strain QJ021]
MAKAVKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLASASVSRSDRLTGYAGESAGVSRVQKLSEISLEALPRFSTG
FQEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLSENMKTLYVTGEESLQQVAMRAHRLNLPTQNLNMLSETSIE
QICLIAEQEQPKLMVIDSIQVMHLADIQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCS
VLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSVMVVWEGTRPLLVEIQALVDQ
SMMSNPRRVAVGLEQNRLAILLAVLHRHGGLQMSDQDVFVNVVGGVKVTETSADLALLLSLVSSFRDRPLPQDLVIFGEV
GLAGEIRPVPSGQERITEAAKHGFKRAIVPHANMPKKTPASMQVFGVKKLADALAILDDL

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=732041 N5056_RS02425 WP_012773160.1 525497..526879(-) (radA) [Pectobacterium aroidearum strain QJ021]
GTGGCAAAAGCCGTCAAACGGGCGTTTGTATGTAATGAATGCGGGGCTGATTACCCGCGCTGGCAAGGGCAGTGCAGCGC
CTGCCATGCCTGGAACACCATTACCGAAGTGCGTCTCGCATCGGCGTCAGTATCACGTTCCGACCGCCTCACCGGCTATG
CGGGTGAGAGTGCTGGCGTCAGCCGGGTACAAAAGCTTTCAGAAATCAGCCTTGAAGCCCTGCCCCGTTTTTCTACCGGT
TTTCAGGAGTTTGACCGCGTTTTGGGCGGCGGCGTCGTTCCCGGCAGCGCGATTCTGATCGGCGGTAACCCCGGCGCGGG
TAAAAGTACCCTGCTGCTGCAAACGCTCTGCAAGCTGTCAGAGAATATGAAAACCCTGTACGTCACCGGGGAAGAATCCT
TACAGCAGGTGGCGATGCGGGCACACCGCCTCAATTTACCGACCCAGAATCTCAATATGCTGTCGGAAACCAGCATCGAA
CAGATTTGCCTGATTGCCGAGCAGGAACAGCCGAAGCTGATGGTGATCGACTCCATTCAGGTCATGCATCTCGCCGATAT
TCAATCGTCTCCCGGCAGCGTAGCGCAGGTGCGAGAAACCGCAGCCTACCTGACGCGCTTTGCCAAAACGCGCGGCGTCG
CCATCGTCATGGTCGGCCACGTCACCAAGGACGGCTCGCTCGCCGGACCGAAAGTATTAGAACACTGCATCGACTGCTCC
GTGCTGCTGGATGGCGATGCCGATTCCCGCTTCCGCACCCTGCGCAGCCATAAAAACCGTTTCGGTGCCGTTAACGAACT
GGGTGTATTCGCGATGACGGAGCAAGGACTACGCGAGGTCAGCAATCCGTCTGCGATTTTCCTTAGCCGCGGGGACGAAG
TGACGTCCGGCAGTTCCGTTATGGTAGTGTGGGAAGGCACGCGCCCGCTGCTGGTCGAGATTCAGGCACTGGTGGATCAA
TCGATGATGTCGAACCCGCGCCGCGTGGCGGTCGGGCTGGAGCAAAATCGGTTAGCCATACTGCTAGCGGTGCTGCATCG
CCACGGCGGCTTGCAGATGTCAGATCAGGATGTGTTCGTGAATGTCGTCGGCGGTGTCAAAGTCACCGAAACCAGCGCTG
ATCTGGCGCTGCTGTTGTCACTGGTCTCCAGCTTCCGCGACCGCCCGCTACCACAGGATCTCGTCATCTTCGGTGAGGTC
GGCCTGGCGGGCGAAATCCGCCCGGTTCCCAGCGGACAAGAGCGGATTACCGAAGCCGCCAAGCACGGCTTCAAACGCGC
CATCGTTCCTCATGCCAATATGCCGAAGAAAACGCCTGCCAGTATGCAGGTATTCGGCGTGAAAAAGCTGGCCGACGCGC
TGGCGATCTTAGACGATCTCTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(89-225)

Subunit ChlI of Mg-chelatase (ChlI)

(348-433)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.696

100

0.487
  radA Streptococcus mitis NCTC 12261

43.421

99.13

0.43
  radA Streptococcus pneumoniae Rx1

43.421

99.13

0.43
  radA Streptococcus pneumoniae D39

43.421

99.13

0.43
  radA Streptococcus pneumoniae R6

43.421

99.13

0.43
  radA Streptococcus pneumoniae TIGR4

43.421

99.13

0.43
  radA Streptococcus mitis SK321

43.421

99.13

0.43