Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   N5P13_RS10850 Genome accession   NZ_CP104736
Coordinates   2317938..2318324 (-) Length   128 a.a.
NCBI ID   WP_004928170.1    Uniprot ID   A0A7G2SIF8
Organism   Acinetobacter baylyi strain JAT2091     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2312938..2323324
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5P13_RS10820 (N5P13_10820) tadA 2313162..2313686 (-) 525 WP_004928147.1 tRNA adenosine(34) deaminase TadA -
  N5P13_RS10825 (N5P13_10825) - 2313692..2314813 (-) 1122 WP_004928151.1 enoyl-CoA hydratase/isomerase family protein -
  N5P13_RS10830 (N5P13_10830) ung 2314810..2315523 (-) 714 WP_004928156.1 uracil-DNA glycosylase -
  N5P13_RS10835 (N5P13_10835) - 2315577..2316173 (-) 597 WP_004928159.1 6-pyruvoyl trahydropterin synthase family protein -
  N5P13_RS10840 (N5P13_10840) gspK 2316332..2317300 (-) 969 WP_004928163.1 type II secretion system minor pseudopilin GspK -
  N5P13_RS10845 (N5P13_10845) xcpW 2317315..2317941 (-) 627 WP_004928166.1 type II secretion system minor pseudopilin GspJ Machinery gene
  N5P13_RS10850 (N5P13_10850) xcpV 2317938..2318324 (-) 387 WP_004928170.1 type II secretion system minor pseudopilin GspI Machinery gene
  N5P13_RS10855 (N5P13_10855) - 2318314..2318862 (-) 549 WP_004928174.1 type II secretion system protein -
  N5P13_RS10860 (N5P13_10860) - 2318875..2319483 (-) 609 WP_004928177.1 TetR/AcrR family transcriptional regulator -
  N5P13_RS10865 (N5P13_10865) - 2319523..2320296 (-) 774 WP_004928179.1 TatD family hydrolase -
  N5P13_RS10870 (N5P13_10870) - 2320314..2320658 (-) 345 WP_004928181.1 PilZ domain-containing protein -
  N5P13_RS10875 (N5P13_10875) - 2320661..2321647 (-) 987 WP_004928184.1 DNA polymerase III subunit delta' -
  N5P13_RS10880 (N5P13_10880) kdsB 2321663..2322424 (-) 762 WP_004928188.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 128 a.a.        Molecular weight: 14241.30 Da        Isoelectric Point: 8.5287

>NTDB_id=731743 N5P13_RS10850 WP_004928170.1 2317938..2318324(-) (xcpV) [Acinetobacter baylyi strain JAT2091]
MKAKGFTLLEVMVALAIFATAAVALTKLGMQYTQSTANAILRTKAQFVAMNEASLMQINHEWLQGTQSKQVTSQGETWQI
DKRAESTISPNVQRIEIQVSLFDTQQNKVEAGITNLVFFNYPQKENAS

Nucleotide


Download         Length: 387 bp        

>NTDB_id=731743 N5P13_RS10850 WP_004928170.1 2317938..2318324(-) (xcpV) [Acinetobacter baylyi strain JAT2091]
ATGAAAGCTAAAGGATTTACCTTGCTTGAGGTGATGGTGGCATTGGCCATTTTCGCAACTGCTGCCGTAGCACTGACGAA
ACTTGGAATGCAATATACCCAATCGACAGCGAATGCAATTTTAAGAACAAAAGCTCAATTTGTTGCGATGAATGAAGCCT
CATTAATGCAAATCAATCATGAATGGTTGCAAGGTACGCAATCTAAACAAGTGACTTCACAAGGTGAAACTTGGCAGATT
GACAAGCGTGCTGAATCAACTATAAGCCCGAATGTGCAACGGATTGAAATACAGGTTAGTCTTTTTGATACCCAGCAAAA
TAAGGTTGAAGCGGGAATTACCAATCTGGTTTTTTTTAATTATCCGCAAAAAGAGAATGCCTCATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(42-101)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G2SIF8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

79.839

96.875

0.773