Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimT   Type   Machinery gene
Locus tag   N5P13_RS03190 Genome accession   NZ_CP104736
Coordinates   683351..683869 (-) Length   172 a.a.
NCBI ID   WP_004922618.1    Uniprot ID   A0A7G2SEP2
Organism   Acinetobacter baylyi strain JAT2091     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 678351..688869
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5P13_RS03160 (N5P13_03160) - 678607..679437 (+) 831 WP_004922636.1 copper resistance protein B -
  N5P13_RS03165 (N5P13_03165) - 679492..680460 (+) 969 WP_004922633.1 cation transporter -
  N5P13_RS03170 (N5P13_03170) - 680597..680917 (+) 321 WP_004922631.1 DMT family transporter -
  N5P13_RS03175 (N5P13_03175) - 680933..681424 (+) 492 WP_004922629.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  N5P13_RS03180 (N5P13_03180) - 681482..681928 (-) 447 WP_004922626.1 VOC family protein -
  N5P13_RS03185 (N5P13_03185) - 682060..683235 (-) 1176 WP_004922622.1 thiolase family protein -
  N5P13_RS03190 (N5P13_03190) fimT 683351..683869 (-) 519 WP_004922618.1 GspH/FimT family pseudopilin Machinery gene
  N5P13_RS03195 (N5P13_03195) omp38 684254..685321 (+) 1068 WP_004922616.1 outer membrane protein Omp38 -
  N5P13_RS03200 (N5P13_03200) - 685433..685594 (-) 162 WP_004922613.1 hypothetical protein -
  N5P13_RS03205 (N5P13_03205) - 685991..687454 (-) 1464 WP_004922610.1 amino acid permease -
  N5P13_RS03210 (N5P13_03210) - 687473..688489 (-) 1017 WP_004922607.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19634.53 Da        Isoelectric Point: 8.6371

>NTDB_id=731734 N5P13_RS03190 WP_004922618.1 683351..683869(-) (fimT) [Acinetobacter baylyi strain JAT2091]
MYNNCFGFTLIEFITVSAIIAILVSLGLPAYHRHMAAQEARTIPHILTIHIQKAKSEAVMYRHNVIICPSHDTQTCSDDW
SNGLIMFLDRNRNRERDLDEKILSATQWNTRYGSLHWRGTLHANNLMFKAGTGLPIASNGSFYYCSEKTANKKLVLSRMG
HIRHEQVNDCTL

Nucleotide


Download         Length: 519 bp        

>NTDB_id=731734 N5P13_RS03190 WP_004922618.1 683351..683869(-) (fimT) [Acinetobacter baylyi strain JAT2091]
ATGTATAACAATTGTTTTGGTTTCACTTTAATCGAATTTATCACTGTCAGTGCAATTATAGCCATTTTAGTGAGCTTAGG
TCTTCCCGCATATCATCGTCATATGGCGGCTCAAGAAGCGCGTACTATTCCTCATATACTCACAATTCACATACAAAAAG
CAAAATCTGAAGCGGTGATGTATCGACATAACGTGATTATCTGTCCAAGTCATGATACACAAACTTGTTCTGATGACTGG
AGCAATGGATTAATCATGTTTCTGGACCGAAACCGTAATCGTGAACGTGATTTAGATGAAAAAATTTTATCTGCTACTCA
ATGGAATACTCGTTATGGTTCACTTCACTGGAGAGGCACCTTACACGCAAACAACCTGATGTTTAAAGCTGGTACAGGTT
TACCAATTGCGTCAAATGGCAGTTTTTATTATTGCTCTGAGAAAACTGCTAATAAAAAACTTGTGCTGAGCCGTATGGGA
CATATTCGGCATGAACAGGTCAACGATTGCACTTTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(3-26)

Type II transport protein GspH (GspH)

(51-159)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G2SEP2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimT Acinetobacter baylyi ADP1

100

100

1