Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   N5P13_RS00970 Genome accession   NZ_CP104736
Coordinates   205817..206974 (-) Length   385 a.a.
NCBI ID   WP_004930460.1    Uniprot ID   A0A7G2SAA0
Organism   Acinetobacter baylyi strain JAT2091     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 200817..211974
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N5P13_RS00950 (N5P13_00950) - 201464..202570 (+) 1107 WP_004930471.1 ABC transporter permease -
  N5P13_RS00955 (N5P13_00955) - 202583..203500 (+) 918 WP_004930467.1 ABC transporter permease -
  N5P13_RS00960 (N5P13_00960) - 204036..204608 (-) 573 WP_004930465.1 L-threonylcarbamoyladenylate synthase -
  N5P13_RS00965 (N5P13_00965) dprA 204648..205799 (-) 1152 WP_004930462.1 DNA-processing protein DprA Machinery gene
  N5P13_RS00970 (N5P13_00970) tsaP 205817..206974 (-) 1158 WP_004930460.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  N5P13_RS00975 (N5P13_00975) def 207095..207619 (+) 525 WP_004930458.1 peptide deformylase -
  N5P13_RS00980 (N5P13_00980) - 207704..208135 (+) 432 WP_004930457.1 DUF2946 family protein -
  N5P13_RS00985 (N5P13_00985) - 208238..210226 (+) 1989 WP_004930454.1 TonB-dependent copper receptor -
  N5P13_RS16965 - 210307..210438 (+) 132 Protein_191 hypothetical protein -
  N5P13_RS00995 (N5P13_00995) - 210637..211842 (-) 1206 WP_004930449.1 oxygenase MpaB family protein -

Sequence

Protein


Download         Length: 385 a.a.        Molecular weight: 42810.15 Da        Isoelectric Point: 8.9324

>NTDB_id=731720 N5P13_RS00970 WP_004930460.1 205817..206974(-) (tsaP) [Acinetobacter baylyi strain JAT2091]
MKKVLNGLRSFYQLGLKQHGLALAICTGIGVTCLGSTTVEAATRNINPPALKAGAPNVYIVKKGDTLWDISGKFLKKPWR
WPEIWASNKHVKNPHWIYPGDRLLLCTLDGRPLVGRDQGDGCEGIIRRYTGRTTLQPQVRIEQLNNIIPVIPLDHIQQWL
ERATIVSAENIKAAPYILGTTDQRVLAAKGQQVYVRGQGLQNAQRYAVYREGEPYTTLDEHGKKRIIGIELLQVASGIAT
QSENDITTMELTQSFNSEVRRGDLVLPEEQAMLPTLFYPTEAHQVMEGGKIIRVMGSISTAGKHSVVTLNRGTTQGTQVG
QVFDIYQQGEVVKDPKTQENIKLPNQNIGSLMIFKTFDELSYAYILESSLPVKVGAEIKPPREED

Nucleotide


Download         Length: 1158 bp        

>NTDB_id=731720 N5P13_RS00970 WP_004930460.1 205817..206974(-) (tsaP) [Acinetobacter baylyi strain JAT2091]
ATGAAAAAGGTTTTGAACGGCTTACGCTCATTTTATCAATTGGGGTTAAAACAACATGGTCTTGCGCTAGCAATCTGTAC
TGGGATTGGAGTTACCTGCTTAGGGAGCACCACGGTCGAGGCAGCTACACGCAATATCAATCCACCGGCATTAAAAGCGG
GTGCTCCAAATGTCTACATTGTTAAAAAAGGAGATACGCTTTGGGATATTTCGGGTAAATTTTTAAAAAAACCATGGCGC
TGGCCTGAAATCTGGGCCAGTAATAAACATGTAAAAAATCCACACTGGATTTATCCAGGTGATCGTTTATTACTGTGTAC
CCTAGATGGACGTCCATTGGTTGGGCGAGATCAAGGCGACGGATGCGAAGGAATTATCCGACGTTATACAGGCAGAACCA
CGCTTCAGCCACAAGTTAGAATTGAACAGCTCAACAATATCATTCCTGTTATTCCTCTAGATCATATCCAGCAGTGGTTA
GAACGGGCAACCATTGTATCTGCAGAGAATATTAAAGCAGCACCATACATTTTAGGTACGACAGATCAGCGTGTTTTAGC
CGCTAAAGGTCAGCAGGTGTATGTTCGTGGTCAAGGTTTACAAAATGCTCAACGCTATGCCGTCTATCGTGAGGGTGAAC
CTTACACCACTCTGGATGAGCATGGTAAAAAACGTATTATTGGTATTGAGTTATTACAGGTTGCCTCTGGTATTGCAACA
CAGTCAGAAAATGACATTACCACCATGGAGCTCACTCAGAGTTTTAATTCCGAAGTCCGTCGTGGTGATTTAGTCCTTCC
TGAAGAGCAAGCGATGTTACCAACTCTGTTTTATCCCACTGAGGCTCATCAGGTCATGGAGGGGGGTAAAATTATTCGGG
TGATGGGTTCAATTTCTACCGCTGGAAAGCACAGTGTCGTCACTTTAAATCGCGGCACAACACAAGGCACTCAAGTGGGT
CAGGTATTTGATATCTATCAACAAGGTGAAGTCGTTAAAGACCCTAAGACACAAGAAAATATTAAACTTCCAAACCAGAA
TATTGGGAGCTTAATGATTTTTAAAACTTTTGATGAATTAAGTTATGCTTATATTCTTGAAAGCAGCCTACCAGTCAAGG
TAGGGGCAGAAATAAAACCACCTCGTGAAGAGGATTAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(59-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G2SAA0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

70.466

100

0.706